Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1328 ATGGCTCTGTGGAGAGTTCGCGCAGCTTCTTCGGCGTTCTCAAATGTCAGCAAGATTAACCTCCTTAAACCCTTCTGCTTCTTCAACAATTGTGGCGCCGATGCCTCCCGCAATTTCTCTTCCGATGCAGCACAAACACATGCTCATAATCCACGTGAGAGTATGATGAATCAAATGATGTATTCTGACATAAATTCACAAATTGGGAGTTGCATGCCACTTGCTGCAATGCGAATAGGAACAATCATTCACAATATTGAGTTGAACCCGGGGCAAGGTGCCAAACTGGTCCGAGCCGCTGGAACTAGAGCAAAGATACTGAAGGAGCCTGCGTCAAGATACTGTTTAGTGCAACTCCCTTCTGGTGTGAAAAAGTTGATCGATTCTCGTTGCAGGGCCACAATTGGTACAGTTTCTAATCCAAGCCATGGAGATCAGAAGCTGAGGAAGGCTGGGCAGAGTCGGTGGCTAGGTCGAAGGCCGGTGGTTCGAGGAGTGGCCATGAATCCTGTAGATCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGAAAATATGGGAGAGTATCCGTTTCTCCTTGGGGCAAACCAACTAAGGGTGGGTACAAGACCGGCCCCCTAAAGCGCAGACGATTTGGCCACAAAATTAGTACTGTTTACAAAGAGAAATGGGAACTCGAATCTGTGAAGGAAGATCGAATATCTTGTGATTCTGAAATGAACCCATTTTTCGTTATGGATCAAGGATTAATGGGTCAAGTTTTGATTTTGATATCCTTCTCCATCATCGTCTCCATCTCACCCTCTTGTAAGCACCTCTACCTATACTCCTCTGCACTTTTTCTTTGTTTATTCATTTGTTTAATGGAAGAAAAAGAAATTTTTTTCTTCATTTATTTTATTAATTATGGGGTAAATTCGAGTGAGAATGCAGATGGGTTTGATCCATTGGATCCTTATGGCAATATCACAATCACATGGGATTTCTTGTCAGATAATGGGGCAACCTTCGATGCGAAGGTATCTATATACAACTTCCAACTATACAGGCACATGGAGAGGCCAGGTTGGAGACTTAGCTGGGCATGGAAAGGAGACGAGGTGATATGGAAGATGTGGGGAGCAGAGGCAACCGAGCAAGGGAATTGCTCAAGGTTTAGGGGACTAGAGAAGCCCCATTGTTGTGAGAAGGAGCCAGTGATAATTGATCTTATGCCTGGGACCCCATATAGCCTTCAGGTCGCAAATTGCTGTAAAGGTGGGATCTTATCATCCATGACCCAAGATCCCACCAAGAATGCTGCTATATTTCAGATGAATTATAACAAAGCCTCAACCCCACTTCCGAACAATGATAGCATGCCTGAGAATTTCACCCTTGGAATCCCTGGTTACTCTTGTGGGACACCTTTTCAGGTCCCTCCTAGCAAGATCACCTCTGATGGCCGTAGATGGACACAGGTTCTTGATACTTGGAATGTGACCTGCATTTACTCTCAGTTTTTAGCATCACCAGCCCCAAAATGCTGTGTCTCCTTGTCTGCATTCTATAACAACACAATTGTTCCTTGCCCTACATGCAGCTGCAATTGCCAAGGGCTACCAGGAGCAAATTGTATCAGTTCTGATGAGAGTCCTTCTTTGTTGCAACTGCCACAAGAGCTGAGCTCAGAAGAGCCACCACCATTGGTGAGGTGTTCACAGCACATGTGCCCCATAAGGGTTCACTGGCATGTGAAACAAAGTTACACAGAGTATTGGAGGGTCAAGATTACTATCACAAATCTGAACTTTGTGAAGAACTATTCTCAGTGGAATTTAGTAATGTTACACCCAAATTTGAAGAGCATAACCCAAGTTTTCAGCTTCAACTACCAACCCCTCAATGTTTATGGAGATTCCAACGATACAGGGATGTTTTGGGGAATCCAGTACTACAATGATATGTTGCTGGCATCCGGGAAGAGTGGGAATGTACAGACAGAGATGCTACTTCATAAAGATCCTGGAAATTTCACCTTCAAAGAAGGCTGGGCTTTCCCAAGAAGAATTTACTTTAATGGAGATGAATGTGTTATGCCCTCTCCTGATGACTACCCCACCCTCCCCAACACAGCTCCTATTTTTCCCACCACAAGGTCTTGCCTTGTAATTTTCTTCTCATTTCTGCTCCCAATATTGTTCTGA 2193 0.446 MALWRVRAASSAFSNVSKINLLKPFCFFNNCGADASRNFSSDAAQTHAHNPRESMMNQMMYSDINSQIGSCMPLAAMRIGTIIHNIELNPGQGAKLVRAAGTRAKILKEPASRYCLVQLPSGVKKLIDSRCRATIGTVSNPSHGDQKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKYGRVSVSPWGKPTKGGYKTGPLKRRRFGHKISTVYKEKWELESVKEDRISCDSEMNPFFVMDQGLMGQVLILISFSIIVSISPSCKHLYLYSSALFLCLFICLMEEKEIFFFIYFINYGVNSSENADGFDPLDPYGNITITWDFLSDNGATFDAKVSIYNFQLYRHMERPGWRLSWAWKGDEVIWKMWGAEATEQGNCSRFRGLEKPHCCEKEPVIIDLMPGTPYSLQVANCCKGGILSSMTQDPTKNAAIFQMNYNKASTPLPNNDSMPENFTLGIPGYSCGTPFQVPPSKITSDGRRWTQVLDTWNVTCIYSQFLASPAPKCCVSLSAFYNNTIVPCPTCSCNCQGLPGANCISSDESPSLLQLPQELSSEEPPPLVRCSQHMCPIRVHWHVKQSYTEYWRVKITITNLNFVKNYSQWNLVMLHPNLKSITQVFSFNYQPLNVYGDSNDTGMFWGIQYYNDMLLASGKSGNVQTEMLLHKDPGNFTFKEGWAFPRRIYFNGDECVMPSPDDYPTLPNTAPIFPTTRSCLVIFFSFLLPILF 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1328 730 Gene3D Ribosomal protein L2, domain 3 139 219 IPR014726 -
Glsi03g1328 730 SUPERFAMILY Translation proteins SH3-like domain 68 204 IPR008991 -
Glsi03g1328 730 ProSitePatterns Ribosomal protein L2 signature. 161 172 IPR022671 GO:0003735|GO:0005840|GO:0006412
Glsi03g1328 730 PANTHER PROTEIN COBRA 304 720 IPR006918 GO:0010215|GO:0016020
Glsi03g1328 730 MobiDBLite consensus disorder prediction 167 192 - -
Glsi03g1328 730 Gene3D - 62 138 IPR014722 -
Glsi03g1328 730 FunFam 50S ribosomal protein L2 139 223 - -
Glsi03g1328 730 SMART Ribosomal_L2_C_2 66 199 IPR022669 GO:0003735|GO:0005840|GO:0006412
Glsi03g1328 730 Pfam Ribosomal Proteins L2, C-terminal domain 68 197 IPR022669 GO:0003735|GO:0005840|GO:0006412
Glsi03g1328 730 FunFam 60S ribosomal protein L2, mitochondrial 62 138 - -
Glsi03g1328 730 Pfam COBRA-like protein 340 501 IPR006918 GO:0010215|GO:0016020
Glsi03g1328 730 SUPERFAMILY Carbohydrate-binding domain 323 390 IPR008965 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1328 Glsi-ChrGlsi03 75245547 75254257 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1328 277 726 COBRA Gene Family AT3G29810 52.183 2.22e-165 482