Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1324 ATGGCTGTACATACAAACCTCCGGCTTATTGCCTACTCACAAGAGATTGTAGATGGACAGCCAATTTTCGTTTCTTCAAATTGTCTTCCTATCAAGGCTTTTAACTTTGAACCTGCAGGCCATGCTTTCCAGTCTGCAGCCCTTAAACTTCTTGGTGTTGAGGAAGATAATGCAGATGGTGATGTTAAGAAAGTGGTTGACGATAAGGAACAGATGTATTATGGATCGTCTGATTCTTATAGTAGCAAGAGTAAAAAGAAATCAGGTGCTGGAGACAAGCAACAAGATCACTATGCATTATTGGGTTTGAGCCATCTAAGGTATCTTGCTACAGAGGATCAAATACGTAAAAGCTATCGTGAAACTGCCTTGAGATATCATCCTGACAAACAGGCTGCTCTTCTTCTGGCTGAGGAGACTGAAGCGGCAAAACTGGCAAAGAAGGATGAAATAGAAACTCATTTTAAGGCAATCCAGGAAGCATATGAGGTGTTGATTGATCCTGTGAAGAGAAGAATTTATGATTCCACAGATGAGTTTGATGATGAACTTCCCACTGACTGTGCTCCCCAAGACTTCTTCAAGGTGTTTGGTCCTGCTTTTATGAGGAATGGACGGTGGTCAGTTAATCAACCAGTTCCATCATTAGGCGATGACAATACTCCATTCAAAGAAGTTGATAATTTCTACGATTTCTGGTACACCTTTAAAAGCTGGAGGGAGTTCCCTCATGCTGATGAGTTTGATCTTGAGCAAGCTGAATCTCGAGACCATAGGAGGTGGATGGAAAGGCAGAATGCAAAACTGACGGAAAAAGCTAGGAAGGAAGAGTATGCACGTATACGGACTCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATTCTGAGGAGAAAGGAAGAGGAAAGAGCTGAGAAGCAAAGGAAAAAGGAGGCTAAGATTCTGGCAAAAAGGTTGCAGGAAGAAGAAGCTGCCAGAATTGCAGAAGAGGAGAAGCGACAGAAGGAGGAGGAAGAGAAACAAGCTGCAGAAGCTGCTTTACAACAGAAGAAGGTGAAGGAGAAAGAGAAAAAGCTCTTGCGGAAGGAGCGAACTCATCTTCGAAAACTTTCAGGACCTATCTTGTCACAGCATCTACTTGACATATCTGAGGACGATGTAGAAAGTCTTTGCATGTTGCTTGATATGGAGGAGCTGAGGAGTTTGTGCCAGAAAATGGAAGGCAAACAGGTGTTGGAGCAAGCAAAAGTTCTAAGAGATGCTCATGGTCGTAAGAAAGATGTGGATAATAAGAAAAATGAGAAAACTGATAAACAGAATGGTGCTGTAAGGGCTAATTGTGGTGTTTCACTAACCAACATTGAGAAGAAGGAGAAACCATGGAGTAAAGAAGAGATCGAGCTATTAAGAAAAGGAATGCAAAAATATCCCAAAGGAACTTCACGGAGGTGGGAGGTCATTTCAGAGTACATTGGTACAGGCAGATCTGTGGAAGAAATTATGAAAGCAACCAAAACAGTTCTCCTACAGAAGCCGGATTCTTCCAAATCATTTGATGCATTTCTTGAGAAAAGGAAACCTGCGCCATCAATTGCATCTCCGCTTACAACTCGAGAAGAATTAGAAGGAAAATCAACTTCTGGGATGCCTGAAAACAATGCTACTGCTACCTCAACAACGAATAACTCAGAAGACTCTCGTGGCAAGAGTTCCGACAACCAGAACTCTACTGGTTCAGTTACTGCAAATGGAGTTTCCTCTAGTTCAGAGCAAGATGCATGGTCTGATGTACAGGAAAGAGCGCTGGTCCAGGCTCTAAAAGCCTTCCCCAAGGAAACTAGCCAGAGATGGGAACGGGTTGCAGCCGCTGTCCCTGGGAAGACTGTGAATCAATGCAAGAAAAAATTTGCAATGTTGAAGGAAAACTTCAGAAACAAGAAAATTGCAGTTTAA 1953 0.4245 MAVHTNLRLIAYSQEIVDGQPIFVSSNCLPIKAFNFEPAGHAFQSAALKLLGVEEDNADGDVKKVVDDKEQMYYGSSDSYSSKSKKKSGAGDKQQDHYALLGLSHLRYLATEDQIRKSYRETALRYHPDKQAALLLAEETEAAKLAKKDEIETHFKAIQEAYEVLIDPVKRRIYDSTDEFDDELPTDCAPQDFFKVFGPAFMRNGRWSVNQPVPSLGDDNTPFKEVDNFYDFWYTFKSWREFPHADEFDLEQAESRDHRRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILRRKEEERAEKQRKKEAKILAKRLQEEEAARIAEEEKRQKEEEEKQAAEAALQQKKVKEKEKKLLRKERTHLRKLSGPILSQHLLDISEDDVESLCMLLDMEELRSLCQKMEGKQVLEQAKVLRDAHGRKKDVDNKKNEKTDKQNGAVRANCGVSLTNIEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKSFDAFLEKRKPAPSIASPLTTREELEGKSTSGMPENNATATSTTNNSEDSRGKSSDNQNSTGSVTANGVSSSSEQDAWSDVQERALVQALKAFPKETSQRWERVAAAVPGKTVNQCKKKFAMLKENFRNKKIAV 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1324 650 ProSiteProfiles SANT domain profile. 589 644 IPR017884 -
Glsi03g1324 650 ProSiteProfiles dnaJ domain profile. 96 178 IPR001623 -
Glsi03g1324 650 SMART dnaj_3 95 170 IPR001623 -
Glsi03g1324 650 Pfam Myb-like DNA-binding domain 593 639 IPR001005 -
Glsi03g1324 650 Pfam Myb-like DNA-binding domain 459 500 IPR001005 -
Glsi03g1324 650 MobiDBLite consensus disorder prediction 529 593 - -
Glsi03g1324 650 ProSiteProfiles Myb-like domain profile. 586 640 IPR001005 -
Glsi03g1324 650 Pfam DnaJ domain 96 175 IPR001623 -
Glsi03g1324 650 Coils Coil 296 365 - -
Glsi03g1324 650 CDD DnaJ 96 167 IPR001623 -
Glsi03g1324 650 CDD SANT 460 502 IPR001005 -
Glsi03g1324 650 FunFam Myb family transcription factor 588 648 - -
Glsi03g1324 650 MobiDBLite consensus disorder prediction 539 593 - -
Glsi03g1324 650 SUPERFAMILY Chaperone J-domain 94 202 IPR036869 -
Glsi03g1324 650 SMART sant 590 642 IPR001005 -
Glsi03g1324 650 SMART sant 457 510 IPR001005 -
Glsi03g1324 650 ProSitePatterns Nt-dnaJ domain signature. 155 174 IPR018253 -
Glsi03g1324 650 ProSiteProfiles Myb-like domain profile. 453 508 IPR001005 -
Glsi03g1324 650 SUPERFAMILY Homeodomain-like 590 642 IPR009057 -
Glsi03g1324 650 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 647 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Glsi03g1324 650 Gene3D - 454 511 - -
Glsi03g1324 650 Gene3D DnaJ domain 92 210 IPR036869 -
Glsi03g1324 650 PRINTS DnaJ domain signature 48 66 IPR001623 -
Glsi03g1324 650 PRINTS DnaJ domain signature 119 134 IPR001623 -
Glsi03g1324 650 PRINTS DnaJ domain signature 150 170 IPR001623 -
Glsi03g1324 650 CDD SANT 593 640 IPR001005 -
Glsi03g1324 650 Gene3D - 584 650 - -
Glsi03g1324 650 SUPERFAMILY Homeodomain-like 453 502 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1324 Glsi-ChrGlsi03 75220532 75222484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1324 97 296 C2H2 Transcription Factor Family AT1G74250 28.870 1.43e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi03g1324 DnaJ 1.2e-17 CL0392