Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1317 ATGCGACACAGTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTTCCCCAGGTGTAATATTCAGGGTGTTGATTCGGTAGCAAGAAAGAAGAAGATTAAAGGGATGGAGAAGTACGAGCTGGTGAAGGACATAGGGTCTGGGAATTTCGGTGTGGCCAGGCTTATGCGCAACAAAGAGACCAAGGAGCTCGTCGCCATGAAGTACATTGAACGGGGTCCCAAGATTGATGAGAATGTGGCAAGGGAGATCATCAACCATAGATCTCTTCGCCATCCAAATATAATTCGGTTCAAGGAGTTGGTTTTGACTCCCACTCATCTTGCAATAGTTATGGAGTATGCTGCAGGTGGAGAGCTCTTTGAGCGAATATGCAGCGCTGGAAGATTCAGTGAAGATGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAACTACTGTCATTCCATGCAAATCTGCCATCGAGACTTGAAGCTAGAGAACACCTTATTGGATGGCAGCCCTGCTCCACGCCTGAAAATTTGTGATTTTGGTTATTCTAAGTCGTCTCTGCTTCATTCAAGACCTAAATCAGCAGTTGGAACTCCAGCCTACATTGCGCCGGAGGTTCTTTCACGCAGAGAATATGATGGAAAGTTGGCAGATGTATGGTCCTGTGGGGTGACACTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGACGATCCCAGAAACTTCAGGAAAACCATAAATCGAATTATGGCTGTTCAATACAAGATCCCGGACTATGTTCACATATCTCAAGAGTGTAGACACCTGCTATCCCGCATTTTTGTGGCAAATCCGGCGAGGAGAATTACCATTAAGGAAATCAAGTCCCACCCATGGTTTTCAAAGAACTTGCCTAGAGAACTGACAGAAGTGGCTCAAGCTGTCTACTACAGAAAAGGAAACCCAACCTTCTCTCTTCAGAGTGTAGAAGACATCATGAAAATTGTTGAAGAGGCCAAAACTCCAGCTCCCGCTTCCAGATCAGTTGGAGGGTTTGGCTGGGGAGGTGAAGAAGAAGAAGAAGAAGAAGAAGTAAACGAAGATGTCGGGGCTGAGGCAGAAGAAGATGAGTATGAAAAGAGAGTCAAAGAGGCTCAGGCTAGTGGGGAATTTCAAGTGAGTTAG 1176 0.4609 MRHSPSLSLSLSLSLSHFPRCNIQGVDSVARKKKIKGMEKYELVKDIGSGNFGVARLMRNKETKELVAMKYIERGPKIDENVAREIINHRSLRHPNIIRFKELVLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVNYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSAVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTINRIMAVQYKIPDYVHISQECRHLLSRIFVANPARRITIKEIKSHPWFSKNLPRELTEVAQAVYYRKGNPTFSLQSVEDIMKIVEEAKTPAPASRSVGGFGWGGEEEEEEEEVNEDVGAEAEEDEYEKRVKEAQASGEFQVS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1317 391 CDD STKc_SnRK2 40 296 - -
Glsi03g1317 391 ProSitePatterns Protein kinases ATP-binding region signature. 47 70 IPR017441 GO:0005524
Glsi03g1317 391 PANTHER SERINE/THREONINE KINASE 38 337 - -
Glsi03g1317 391 SUPERFAMILY Protein kinase-like (PK-like) 33 327 IPR011009 -
Glsi03g1317 391 Gene3D Transferase(Phosphotransferase) domain 1 117 305 - -
Glsi03g1317 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Glsi03g1317 391 SMART serkin_6 41 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1317 391 MobiDBLite consensus disorder prediction 340 391 - -
Glsi03g1317 391 MobiDBLite consensus disorder prediction 352 371 - -
Glsi03g1317 391 ProSiteProfiles Protein kinase domain profile. 41 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1317 391 FunFam Serine/threonine-protein kinase SRK2A 117 305 - -
Glsi03g1317 391 FunFam Serine/threonine-protein kinase SRK2E 38 116 - -
Glsi03g1317 391 Pfam Protein kinase domain 41 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1317 391 Gene3D Phosphorylase Kinase; domain 1 23 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1317 Glsi-ChrGlsi03 75167252 75172228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1317 35 300 CBL-interacting serine-threonine protein kinases AT4G24400 42.545 4.64e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Glsi03g1317 Pkinase 6.7e-72 CL0016