Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1316 ATGATTATGCATTTCATAAATATTGTGAATTTTAGAAGTATTACAAGTATTAGGCTGTCTCTTTATTATTGGCCTGTCTCTTTTCATACCAGTTCAGCCGAGGGTTTGAGATACGATGATAAGCTTCCTAAAGTTAATTGGTTGCAACATGCCAGTGCGCATGAAAACTTTTCATGTCAAAACAGGTTTTTGACATCAAATTTTCTATTCTCCTTGTCAACTCAAAAACCTTGCTCTGACGAAGCAGTGTCTGGGAGATCTGTAGTCTGTCAAAATCAGAATATTCAAAGTATGCAGAGAGCACAAGTTGAAAAGGGTTGGCGGGCTCTTTCGAGTCTTCAGAATTCTTGCAGGAACTATGCCAAACCTGGAAAAACTGTACATATCAATCCTCCGCGTCATCCAGACAAGAGAATAACTGCCTTACCGGGAAGATCTGAGAATGATAAATGCTCTTCAAATTTGCAAAACTATAAAGTCTTTGGTGAAAACAATGCCAAATCTAATCAATATTTTCCATCGAGTAATGCTAGAGCTGAAGGTGGAAGGGATGGTTTGAGGTGCGAAGACACCAGAACCCCAACTGTCAATAATCATTATTCTCGAGTTTTGGATGGTTCTGTGAACAATCATACTAAGTATAATGGTGAAATGAACGAGTCTACAAAATGTATGGCTGTCAACATTGATGATGATGATGACATACTTGAGAAGATAGATGTTGACCAAATAGTGGAAAACTACCAGTCATCTTGCACTCCTCAACCATCAATATCCAAGCTTCCTCCTATTTCTCCAATTGTAGATAAAAATAGCTTTTCTAGCCAAGGGGAAAAGAGTTTACCGCCCGAGTTGTGCGCAGATTGCGTTCATGGTTATAAGGTAGGGCTTTGCCCTGAAGCAGCAAACCATTTGCAGGGATGGAAAGACAATCTGATTGCTATCTCCAATGAACTGCTTGACAATGTTGACCACCTCAGTCCTACACAGATAGCAAAACTTCGCCAAGACAGGTCACAGCTAAATAAGCAAATTCAGCAGCTTGAAAGCTATATTCAGTCCAGTAAGCTTGATGAGGAAAGACAAAAGTCACATTTTTCTGCGTCCACGGCACCTCCGACATCATTTGTGTTTGGAACACCTCAGCAAACTGTACTTAGGAGTGGACCAATGAGATATGATGAACAGGTTTATACGGGTTATGAGCCATGTGGGTCATCATTCCAGTCATTTTCATTCTCATCTGTAGATAAGTACGGAATGTCTTCAGGTACAGTGGAAAGAGAAACATTTATTCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGTGACAAACGCTGGAGCGACCAGAATTTCCCTTGGACAAAAAAGCTGGAGGTCAATAATAAAAAGGTTTTTGGAAATCACTCATTCCGCCCAAATCAAAGAGAGGTCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTAATGCCGACAGGTGGAGGCAAGAGTCTGACGTATCAGCTCCCTGCTCTTGTTTGTCCAGGTATAACGTTAGTAATTTCCCCCCTTGTCTCCCTCATTCAAGATCAAATAATGCATCTGTTGCAGGCAAACATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAACAGGATATCCTTAGAGAAATTAATTCTGATTATTGTAAATACAAGTTGTTATATGTGACACCAGAAAAGGTTGCCAGAAGTGATGTTCTTCTGCGAAACTTGGAGAGTTTACATGTCCGTGAGTTGCTGGCAAGGATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACGGCTACAGCAACAGCCAGTGTAAAAGAAGATGTTGTTCAAGCTCTTGGTCTCGTCAATTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAATTTATGGTATTCTGTTATCCCCAAGACAAGAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGAAAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAAGTAGCTGAAAAATTACGGGAATGTGGACATAAAGCTGCATTTTATCATGGTAGCATGGATCCTGCTCAAAGAGCTTTTGTTCAAAAGCAGTGGAGCAAGGATGAAATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATTCATCATTCTCTCCCAAAATCTATTGAAGGCTACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGTGTGTTGTATTATAGTTATAGCGACTATATACGAGTTAAGCACATGCTAAGTCAAGGAGCAATAGAGCAAAGTCCCATGACACCTGGATACAATCGTTCAAATATGACAAATTCAGGGAGGATACTGGAAACTAACACTGAAAACCTTTTAAAAATGGTCAGTTATTGTGAAAATAATGTTGATTGTCGACGACTTCTACAGCTTGCTCATTTTGGGGAGAGGTTTGATTCTGCTACCTGTAAGAAAACATGTGACAATTGTTTGAAGATCAAAAGTTTTATTGAGAAGGATGTCACAGAGATCGCAAAGCAATTGGTTGAACTAGTTAAGCTAACGGGGCAGAAGTTCTCATCATCTCATATATTAGAAGTGTACCGGGGTTCCTTGAGCCAGTTTGTCAAGAAACATCGACATGAGACTGTGAGCCTTCATAGTGCTGGGAAGCATCTAGCTAAGGGTGAGGCTTCCCGCGTATTGCATCATCTTGTTGTTGAGGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATCTTTATGGATCAGTCTCATCAGTATTGAAGGTAAACGAGCCCAAGGTCCGTAATCTGTTGTTTGGTGGGCAGAGAATTTTATTAAGATTTCCTTCCCCGGTAAAAGCATCAACGCTGGGGAGATCTGATGTTACTCCGGCTAAAGGCTCTCTGACATCTGGGAGGCCAAGTCTTCCACAAAATGACACTTCTGCCCAGGCTCAAACTGAAGTGGATTTGAATCTTTCAGCTAAGCTGTACACTGCTCTGCGGATGCTGCGGACGGCTATTGTTAGAGAGGCTGGAGAGGGTGTCATGGCTTACCACATATTTGGTAATGCTACGCTGCAGCAGATAAGCAAGAGACTGCCCAGAACTAAGGAAGAACTGCTTGAGATCAATGGCATTGGCAAGGCTAAGATAAGCAAGTATGGAGATCGGCTACTTGAAACTATTGAAAATACTAGAAAGGAACATTACAAATTGGACAAAAACAACAGCGGCAGCAATGAGAGTACTGACTCTGCTAAAAGGAGAAGAGAGACAAATGGTGACCCTAACGAGAATGTGGATGATGATGACTTCACCAAAAGTACTGGTCGTTCAAAGAAAAGGACGGTAAAGAGACAGAATAAAAAGGCTGAGATTTATGATTCTGCAGAGGAAGATCATTACAATGATTGCATAGATGATGACCTAGATTTTGACAAAATAGAAAATGCTGCATTGGATAAAATAACTAGTAGGAATCCTGCAGGAAGATTCCTCCCTCAATGGACATCTTAA 3669 0.4056 MIMHFINIVNFRSITSIRLSLYYWPVSFHTSSAEGLRYDDKLPKVNWLQHASAHENFSCQNRFLTSNFLFSLSTQKPCSDEAVSGRSVVCQNQNIQSMQRAQVEKGWRALSSLQNSCRNYAKPGKTVHINPPRHPDKRITALPGRSENDKCSSNLQNYKVFGENNAKSNQYFPSSNARAEGGRDGLRCEDTRTPTVNNHYSRVLDGSVNNHTKYNGEMNESTKCMAVNIDDDDDILEKIDVDQIVENYQSSCTPQPSISKLPPISPIVDKNSFSSQGEKSLPPELCADCVHGYKVGLCPEAANHLQGWKDNLIAISNELLDNVDHLSPTQIAKLRQDRSQLNKQIQQLESYIQSSKLDEERQKSHFSASTAPPTSFVFGTPQQTVLRSGPMRYDEQVYTGYEPCGSSFQSFSFSSVDKYGMSSGTVERETFIPKIIEVNYIEGSGDKRWSDQNFPWTKKLEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALVCPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQDILREINSDYCKYKLLYVTPEKVARSDVLLRNLESLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVIPKTRKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLRECGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSQGAIEQSPMTPGYNRSNMTNSGRILETNTENLLKMVSYCENNVDCRRLLQLAHFGERFDSATCKKTCDNCLKIKSFIEKDVTEIAKQLVELVKLTGQKFSSSHILEVYRGSLSQFVKKHRHETVSLHSAGKHLAKGEASRVLHHLVVEDFLVEDVKKSDLYGSVSSVLKVNEPKVRNLLFGGQRILLRFPSPVKASTLGRSDVTPAKGSLTSGRPSLPQNDTSAQAQTEVDLNLSAKLYTALRMLRTAIVREAGEGVMAYHIFGNATLQQISKRLPRTKEELLEINGIGKAKISKYGDRLLETIENTRKEHYKLDKNNSGSNESTDSAKRRRETNGDPNENVDDDDFTKSTGRSKKRTVKRQNKKAEIYDSAEEDHYNDCIDDDLDFDKIENAALDKITSRNPAGRFLPQWTS 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1316 1222 Gene3D HRDC domain 1037 1125 IPR044876 -
Glsi03g1316 1222 MobiDBLite consensus disorder prediction 1011 1033 - -
Glsi03g1316 1222 ProSiteProfiles Rhodanese domain profile. 696 738 IPR001763 -
Glsi03g1316 1222 ProSiteProfiles HRDC domain profile. 1041 1123 IPR002121 GO:0003676
Glsi03g1316 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 805 IPR027417 -
Glsi03g1316 1222 SMART ultradead3 469 672 IPR014001 -
Glsi03g1316 1222 SMART RQC_2 889 1000 IPR018982 GO:0006260|GO:0006281|GO:0043138
Glsi03g1316 1222 FunFam ATP-dependent DNA helicase Q-like 4A 1037 1123 - -
Glsi03g1316 1222 Pfam DEAD/DEAH box helicase 475 643 IPR011545 GO:0003676|GO:0005524
Glsi03g1316 1222 SMART hrdc7 1041 1123 IPR002121 GO:0003676
Glsi03g1316 1222 Pfam HRDC domain 1045 1113 IPR002121 GO:0003676
Glsi03g1316 1222 FunFam Bloom syndrome, RecQ helicase 664 884 - -
Glsi03g1316 1222 MobiDBLite consensus disorder prediction 172 198 - -
Glsi03g1316 1222 Pfam RQC domain 886 1000 IPR018982 GO:0006260|GO:0006281|GO:0043138
Glsi03g1316 1222 MobiDBLite consensus disorder prediction 1120 1182 - -
Glsi03g1316 1222 Gene3D - 887 997 IPR036388 -
Glsi03g1316 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 930 IPR027417 -
Glsi03g1316 1222 MobiDBLite consensus disorder prediction 1134 1162 - -
Glsi03g1316 1222 NCBIfam RecQ family ATP-dependent DNA helicase 465 940 IPR004589 GO:0004386|GO:0006310
Glsi03g1316 1222 CDD SF2_C_RecQ 664 796 - -
Glsi03g1316 1222 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 481 656 IPR014001 -
Glsi03g1316 1222 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 681 824 IPR001650 -
Glsi03g1316 1222 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 595 604 IPR002464 -
Glsi03g1316 1222 CDD DEXHc_RecQ 464 663 - -
Glsi03g1316 1222 Pfam Helicase conserved C-terminal domain 680 786 IPR001650 -
Glsi03g1316 1222 Coils Coil 331 358 - -
Glsi03g1316 1222 FunFam ATP-dependent DNA helicase RecQ 446 663 - -
Glsi03g1316 1222 Gene3D - 664 882 IPR027417 -
Glsi03g1316 1222 Pfam RecQ zinc-binding 798 880 IPR032284 -
Glsi03g1316 1222 MobiDBLite consensus disorder prediction 1007 1033 - -
Glsi03g1316 1222 SMART helicmild6 706 787 IPR001650 -
Glsi03g1316 1222 SUPERFAMILY HRDC-like 1044 1118 IPR010997 GO:0000166|GO:0044237
Glsi03g1316 1222 Gene3D - 437 663 IPR027417 -
Glsi03g1316 1222 PANTHER DNA HELICASE RECQ FAMILY MEMBER 445 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1316 Glsi-ChrGlsi03 75152120 75167134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1316 695 818 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 7.44e-08 54.3