LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g1308	ATGCCTAAATTGAAAGAGAACATGAAGCTTAATAGATTAATCACAGAGATGAAGATTGTTTTGGTTTTTCCTTTGCTTTTTGCCATGCTTCTGAGTCCAAGCTTTAGCTTAGCAGACTCTTCTTCTTCTTCTTCCTCCATTCTTTCCCGTGGTAACTCATCCACATCATGCCCTATGGACCTGAACTATGTGCTTAGAATCCCGTGGAATACCTCTGGCTGCCAAAACTTCCACCCTTTAGCAAGCCGAAATGAAACTAGCGGGACCCCTTGTTGCCAAACTATCTTATCCCTCTTGGGCGTAGGACTAGCCGAACACCTCAAAGAAACCTCCATTTTCAATCTCCCCAACCTTCCTACCTCCATTTCATGCCTCCAAGACTTCCAATCCAAGCTCAATTCCCTCTCTCTCCCTAACAACCTTGTCTCCTCCTGCTTTGACCCACTTCAATTTGTGATCACCCCCAACGTCTGTGCCCATATTCAAACCATCCCAGATTGGGTCAGCAAGCTTGGCGAAACGACGCCGCTCAGCACTGGCTGCAAAGCAGACCTCACCGATCTCACCCTCTGTGATGCCTGCGTGGCTGCGGGTTTCCAGGTTCAGCAGAAGCTCACTTCCATTGATGGTAACTCTTCTCATTCCACAAATTGCTGGTACTTAGCCATTATTTATGCTGCTGGTATTGTGAACAAGTTTGGCCCTGAGAGCAATGGTGCTGTGACTTGCATTTTTGGCATGTCTGTTTATTCCCAAGGGGGTTCTGGAGGAAATGGACACCACCAAGCTCTTGTTTTTGGGTTAACTGGAGCTGGGGTTGGATTGGTAGCCATGTTTGGTTTGTTGGGGCTTTATATTTGGTATGATAGGAAGTGGAGGAAGAGAAAGCTTGGGACTTTTGAGTTTGATATTGACCCTGAGGATCAAGGGTCTAGGCCTAGATTGAGACCAAATACTGGGTCAATTTGGTTCAAAATTGAGGAGCTTGAGAAGGCGACTAATGGTTTTTCATCTAAGAACTTCATAGGAAGAGGTGGATTTGGGCTAGTATATAAGGGAACTTTGCCTGATGGAACAGAAGTTGCAGTTAAAAGGATTCTAGAATCTGATTTTCAAGGGAATATTGAGTTCTGCAATGAGGTGGAGATTATTAGTAATCTTAAGCACCGACAACTTGTGCCACTTAGAGGGTGTTGTGTGGTTGATGAGGGTGAGAGTTACGATGAAAGAGGAAGTCAAAGATATCTTGTTTATGAATATATGCCAAATGGTAACCTTGAAGATCATCTCTTCCCGTCAAGGGGTAATCAAAATGCGAAGAAATCACTGACTTGGCCTCAAAGAAAGGCCGTAATCTTGGATGTGGCAAATGGGTTGGTTTATTTGCACTATGGAGTTAAACCTGCAATTTATCACAGAGATATCAAGGCCACCAATATACTACTTGATGTCGATATGAGGGCAAGAGTTGCAGATTTCGGGCTGGCTAAACAAAGCAGGGAAGGTCAGTCACATCTCACTACTAGAGTAGCTGGAACTCATGGGTATTTAGCCCCAGAATATGCACTTTATGGTCAGCTTACTGAGAAGAGTGATGTCTATAGCTTCGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTGTCTTCATCAGCATCGCCAAGAGCATTCTTGATCACAGATTGGGCATGGTCCTTGGTGAAATCTGGGAACATAGAGGACGCTTTGGATGCTTCCCTCTTGAAAAATGAATATTCTTCTACTTCAAATCCTAAGAGTATAATGGAAAGGTTTTTATTGGTGGGAATTCTATGTTCTCATGTAATGGTTGCTTTGAGACCAACAATTTCTGAAGCTTTGAAGATGTTGGAAGGTGATATCGAAGTTCCACAAATTCCTGACCGGCCCATGCCTCTCGGACATCCTTTGTTTTACAATGATGGTAATAATACTTTTAGCATATCTCCAGCATTAAGCGGCCCGAAATTGCAAAATGGAGACATGCTCAGGTCTGCCTGTGCCTTTATGAAGTTCCATATATGGTGCAATGCCATATTGCCAACCAACGACGGGGAGGCAGGGCATAAGAAACGACGATTCAGTTCATTGGAGATATGTAGAGGAGCCCTTCAGAAGGATCTGAGGTCCAAGATCTAA	2169	0.4394	MPKLKENMKLNRLITEMKIVLVFPLLFAMLLSPSFSLADSSSSSSSILSRGNSSTSCPMDLNYVLRIPWNTSGCQNFHPLASRNETSGTPCCQTILSLLGVGLAEHLKETSIFNLPNLPTSISCLQDFQSKLNSLSLPNNLVSSCFDPLQFVITPNVCAHIQTIPDWVSKLGETTPLSTGCKADLTDLTLCDACVAAGFQVQQKLTSIDGNSSHSTNCWYLAIIYAAGIVNKFGPESNGAVTCIFGMSVYSQGGSGGNGHHQALVFGLTGAGVGLVAMFGLLGLYIWYDRKWRKRKLGTFEFDIDPEDQGSRPRLRPNTGSIWFKIEELEKATNGFSSKNFIGRGGFGLVYKGTLPDGTEVAVKRILESDFQGNIEFCNEVEIISNLKHRQLVPLRGCCVVDEGESYDERGSQRYLVYEYMPNGNLEDHLFPSRGNQNAKKSLTWPQRKAVILDVANGLVYLHYGVKPAIYHRDIKATNILLDVDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSASPRAFLITDWAWSLVKSGNIEDALDASLLKNEYSSTSNPKSIMERFLLVGILCSHVMVALRPTISEALKMLEGDIEVPQIPDRPMPLGHPLFYNDGNNTFSISPALSGPKLQNGDMLRSACAFMKFHIWCNAILPTNDGEAGHKKRRFSSLEICRGALQKDLRSKI	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g1308	722	Gene3D	Phosphorylase Kinase; domain 1	309	420	-	-
	Glsi03g1308	722	ProSitePatterns	Protein kinases ATP-binding region signature.	342	364	IPR017441	GO:0005524
	Glsi03g1308	722	ProSiteProfiles	Protein kinase domain profile.	336	648	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g1308	722	Pfam	Protein kinase domain	338	560	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g1308	722	SUPERFAMILY	Protein kinase-like (PK-like)	314	628	IPR011009	-
	Glsi03g1308	722	FunFam	probable receptor-like protein kinase At1g11050	300	420	-	-
	Glsi03g1308	722	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	421	635	-	-
	Glsi03g1308	722	CDD	STKc_IRAK	342	629	-	-
	Glsi03g1308	722	SMART	serkin_6	336	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g1308	722	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
	Glsi03g1308	722	PANTHER	OS01G0750732 PROTEIN	78	635	-	-
	Glsi03g1308	722	Pfam	SPARK	52	218	IPR043891	-
	Glsi03g1308	722	Gene3D	Transferase(Phosphotransferase) domain 1	421	635	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g1308	Glsi-ChrGlsi03	75101303	75104276	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g1308	54	674	Receptor kinase-like Gene Family	AT1G11050	66.184	0.0	816

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RKF3	Glsi03g1308		Pkinase	1e-41	CL0016