Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1280 ATGGATACGAGAGGCCGTCCTCGTGTTGTCGTCAATGGGGTTCGAAGAACGAGAACCTTCCATTACTTCTGGTGTCAAAATTGCCAACGTGCTGTGAGAATTCCCTCCTCTGTAAACCTTAATGCCTCTTTTTGCCCCTTTTGCTTCCATCAACTTTTCTACGAGCTTGATATCACAAGGCCTAGGCTTCTCATGAATGTGCCTAATAATTTGGAGCCTTCCCCTGGTTCCCAGGTTATGAATGGCCTGGCCCTTGTTCTCGATCCATCTATGAGGGATCGAAACACCCATTTAGATCGAAGAACAACTCAATGGGTTACAGAAACTGACGATGGACCAAATCCTCAGACTTGGATTACCCTCCGGTTTGTCAGACCAACTCGTCCACAAGGGCACATTCCCCCTCCCCCACCACAAAATGGGCTGGCCATTGACAACACCCATTTCGGGAATGAAGTCATCAACTTTGGTGAGAATAACCGGTCAGGGCCGCCTCCGGCGGCGGCTTCTGCCATTGAAGCATTGCCAATCGTGAAATTGACACAAATCCATTTGGCAAGTGACTCAAATTGCCCAATTTGCAAAGATGAGTTTCAGATTGATATGGAAGTGAAAGAGTTACCCTGCAAGCATTTCTTCCATTCTGAATGCATTGTCCCTTGGCTTCGCCTCCACAATACTTGTCCTATCTGCCGTCATGAACTACAAGGAACTTCTAACCGTCATTTCCAAGATGAAAATTACCAACATTTTGATCTTGGGTTTGGCTTTGGCTTTGAAGAAGCGGCACAGAGTTTGAATTGGCTTTGGAGCCAACTGGTTTCTTTCAGACCTTTACGTGCAGTTTTAGATTGGACTCAGAGATATTACTTTGATTTCCAAGGAAATCATGGTAGAAGAGGCAGAGGCATTGAGCAGTCTGGGCTTGGGGAATTACAAGAGGCAGGCTCCTGTTTCATAAGAAATTATTCTCTAATGGCCTTCTGCATCAGAATATGCTATGCTTTGTCTTTGTCTGTCACTGGACCTGGAAAGGAAATGGTAGGATCCGTTTTGCCAGTTATGCGCGAAGCTTTCTGGTTACCAGTATGCAAGGCCGGTCCTCACCTGCTTGATCTCAAATCCACTGCTGCATCCCTCCAATCCAGCCACCTTCTCTGCCGGCAAATTGTCCTTCAGGCTTCAGTCCTGTTCCAAGGACCTGTTGATCTAACACTCTTTGCACCCTACTTTAGGTCTGATGGAATTTTTGCATCAGCTGTAATATGGCAACAAAGTTACAGTACAGACTTAGATGCTCAAAGAACCCACAATTCGTCGCATATCATACACTTGAATGGATACAGGAGATGGTTCTTTTGTGCATCTAAAGGCCAACCTTTGCCCTTAATTAGTCATGCTGTTAGTTAG 1410 0.4567 MDTRGRPRVVVNGVRRTRTFHYFWCQNCQRAVRIPSSVNLNASFCPFCFHQLFYELDITRPRLLMNVPNNLEPSPGSQVMNGLALVLDPSMRDRNTHLDRRTTQWVTETDDGPNPQTWITLRFVRPTRPQGHIPPPPPQNGLAIDNTHFGNEVINFGENNRSGPPPAAASAIEALPIVKLTQIHLASDSNCPICKDEFQIDMEVKELPCKHFFHSECIVPWLRLHNTCPICRHELQGTSNRHFQDENYQHFDLGFGFGFEEAAQSLNWLWSQLVSFRPLRAVLDWTQRYYFDFQGNHGRRGRGIEQSGLGELQEAGSCFIRNYSLMAFCIRICYALSLSVTGPGKEMVGSVLPVMREAFWLPVCKAGPHLLDLKSTAASLQSSHLLCRQIVLQASVLFQGPVDLTLFAPYFRSDGIFASAVIWQQSYSTDLDAQRTHNSSHIIHLNGYRRWFFCASKGQPLPLISHAVS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1280 469 FunFam E3 ubiquitin-protein ligase RING1-like 154 238 - -
Glsi03g1280 469 SMART ring_2 191 231 IPR001841 -
Glsi03g1280 469 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Glsi03g1280 469 Pfam Ring finger domain 190 232 IPR001841 -
Glsi03g1280 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 130 235 - -
Glsi03g1280 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Glsi03g1280 469 SUPERFAMILY RING/U-box 171 236 - -
Glsi03g1280 469 CDD RING-H2_RNF126-like 190 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1280 Glsi-ChrGlsi03 74815489 74820130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1280 1 287 C3H Transcription Factor Family AT1G68180 33.333 1.77e-40 143