Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1270 ATGATATACCTGAAACGGAGCAGAGCACGTGAAGCGGCACTCCGGGTAGGAGGCTACGTTATGCGAGCAGTGAAATGCACTTTGGTTGCTCAAACTAATTTGTTGGATTCAAATACTCTTGAACTTCGAGTCTGAGCCAACTATGCTGATATGTTGATGTGCCAGTGGACAGGTTTAGTCAGTCAATTTAGGCTTTTGAAAATGGAAAAGATAAAGCGAAGGATGACGAGGATTGAGGCTTTAAACCTTGGAGCCTGCTATCTTAAGTTATATTGGGGCACAACTCTTTTGGGTAGCATCAGATTCTGTAACTGTTGTAATTTGGAAATGGCAAAAGGAAGCAGGGGACGACGCAGGATTAATTTGCGTCAGTACAGGCCTAGTCCTTACCCTTTGCCTGCATGCAAAAGGAATATTTGTGAGGATTTATGCCCAAAGAAATGCTCCACAGCGTTGGATAAGAACGACTGGGAAGATGTGACATGTTCTGTGTGCATGGAATATCCACACAATGCTGTTCTTTTACTTTGCTCCTCTCACGACAAGGGTTGCCGTCCCTATATGTGTGGAACTAGTCTTCGTCATTCCAACTGCCTTGATCAGTACAAGAAAGCTTACACGAAAGTTATCTCATCCAATGATGGACAACCTGGGCAAGGCTTGATCAGTAATCCAAGTGTGCTGCCGGATTATAACTTGCCTCTCGAAAAGAGTGAAATCACAGAGCTTGCATGCCCCCTATGTAGGGGTCAGGTGAAAGGTTGGACTGTTGTAGAACTTGCACGGGAGTATCTTAATTCAAAGAAGAGAAGCTGTATGCAGGACAACTGCTCGTATGTTGGGAATTACAAGGAGTTGAAGAAGCATGTTCGGGCAGAGCATCCCTCGGCTCGTCCACGTGTAGTAGATCCTACTCATGAACAGAAATGGAGATGGCTTGAGTGGGAGCGTGAGCGGGAAGATGTTATCAGCACAATAACATCAACCATGCCTGGGGCAATGGTTTTTGGAGATTATGTGATAGAAGGAAATCATAATGATTTAGATACAGACGAAGAGGATGGTGCTCCTAATGCTGATGCTTCTGAAAGAAATGGAAGATTTCAGATGGGCTTGGAGGCAATGAATTTCTTTCTGCTATTGCATGCAGTTCGTCAAGGGAATGAACTTAACCTTAGTAGACGACCGAGGCCTGAGCTGGCATCCCATCGAGCATCAGGTCAGGCCAGTGCTCTCCATACCACTCCTGTTGGTGAGGTGGATTTCTCAGATCAGGACGATGACAATGACGGGTATAGTGAAGGTGACGACGACGGTATATCCCTAGTCAGCCATCTCCGTCGTCATGGCAGTGGCAGAGTTCTATTGGGTCCCCCCGGTAGGAGGCGTAGACGTAGAGAAGGAAAAGCAGAGAGCGAGGGCGAGGCAGAACAACCACCACCACCACCAAAAATGCCAAAGTCTAAAAGAAATAAAGCAGTTACACTCTCGAAGACGAAGAGAAAGGGAAGGGAACATAAAGAAGCAATAGTAAATGCAATAAAAGAGGCTGCTGAAAAATACAGTTCAGTGTATGTGTTCTCTTTTGAAAACATGAGAAATCAAAAATTTAAGAATTTCAGGGATCAACTGAAATCTACCAGCAGGTTTTTCTTGGGCTCAAACAAAGTCATGCAGGTCGCTCTAGGTCATTCTGCTGCTGATGAGATTAGACCAGGGCTTCATAAGGTTTCTAAGCTTCTTCGTGGAGATGCTGGAATGTTATTTACGAATTTGCCAAAAGAAGAAATCGAAAGGTTATTTAATGAGTTTGAGGAATATGATTTTGGAAGAACAGGAAGCACTGCAACTGAGAAGGTGGAGCTCAAGGAGGGGCCTTTGGAGCAGTTCACACATGAGATGGAGCCTTTTCTACGGAAACAAGGCCTGCCTGTTCGGTTAAATAAAGGAGTGGTGGAACTCATCTCTGATTTTGTTGTTTGTGAGGAGGGAAATCCCTTGTCGCCTGAGTCATCTCGCATACTGCGTTTACTGGGAATTAAGATGGCCACATTTCGGCTCCATCTGATATGCAGATGGAGCCCTGATGATTTTGAACTCTACATTCAAGGACCAGATGATTCAGACGTTGAGTGCACATAA 2142 0.4491 MIYLKRSRAREAALRVGGYVMRAVKCTLVAQTNLLDSNTLELRVXANYADMLMCQWTGLVSQFRLLKMEKIKRRMTRIEALNLGACYLKLYWGTTLLGSIRFCNCCNLEMAKGSRGRRRINLRQYRPSPYPLPACKRNICEDLCPKKCSTALDKNDWEDVTCSVCMEYPHNAVLLLCSSHDKGCRPYMCGTSLRHSNCLDQYKKAYTKVISSNDGQPGQGLISNPSVLPDYNLPLEKSEITELACPLCRGQVKGWTVVELAREYLNSKKRSCMQDNCSYVGNYKELKKHVRAEHPSARPRVVDPTHEQKWRWLEWEREREDVISTITSTMPGAMVFGDYVIEGNHNDLDTDEEDGAPNADASERNGRFQMGLEAMNFFLLLHAVRQGNELNLSRRPRPELASHRASGQASALHTTPVGEVDFSDQDDDNDGYSEGDDDGISLVSHLRRHGSGRVLLGPPGRRRRRREGKAESEGEAEQPPPPPKMPKSKRNKAVTLSKTKRKGREHKEAIVNAIKEAAEKYSSVYVFSFENMRNQKFKNFRDQLKSTSRFFLGSNKVMQVALGHSAADEIRPGLHKVSKLLRGDAGMLFTNLPKEEIERLFNEFEEYDFGRTGSTATEKVELKEGPLEQFTHEMEPFLRKQGLPVRLNKGVVELISDFVVCEEGNPLSPESSRILRLLGIKMATFRLHLICRWSPDDFELYIQGPDDSDVECT 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1270 713 Pfam Protein of unknown function (DUF1644) 158 324 IPR012866 -
Glsi03g1270 713 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 485 704 - -
Glsi03g1270 713 SUPERFAMILY Ribosomal protein L10-like 504 626 IPR043141 -
Glsi03g1270 713 MobiDBLite consensus disorder prediction 344 360 - -
Glsi03g1270 713 Pfam Insertion domain in 60S ribosomal protein L10P 611 680 IPR040637 -
Glsi03g1270 713 Pfam Ribosomal protein L10 503 604 IPR001790 -
Glsi03g1270 713 FunFam Ribosome assembly factor mrt4 609 682 - -
Glsi03g1270 713 CDD Ribosomal_P0_like 505 668 IPR033867 GO:0000027
Glsi03g1270 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 302 IPR013083 -
Glsi03g1270 713 Gene3D - 609 682 IPR043164 -
Glsi03g1270 713 MobiDBLite consensus disorder prediction 421 435 - -
Glsi03g1270 713 MobiDBLite consensus disorder prediction 344 367 - -
Glsi03g1270 713 FunFam Ribosome assembly factor mrt4 513 612 - -
Glsi03g1270 713 MobiDBLite consensus disorder prediction 394 504 - -
Glsi03g1270 713 Gene3D - 514 695 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1270 Glsi-ChrGlsi03 74727030 74740077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1270 519 701 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 22.105 1.35e-09 58.5