Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1266 ATGTCTTCCCTCAAACTCCCTTCCTACTTTTTGCTTCTTGTCTTCCTCTGTTTTGCCGCTACTGAAGCATATGAATTTAACCTTACCGTGTGCTCAAGCAACCCAACTTCAACTCGAAGCAGAGCGTACCAATCCAACCTCAGGACTCTCCTCTATTCCTTATCTTCCAACGCCGCCGCCAACAAAGATTTCTACAACACCACCGCCGGCGCTACAAACACCACCGACGCTGTTTACGGCCTCTTCATGTGCCGAGGCGACGTCTCCCACGATGTCTGTGAAGATTGTGTAGCAAATGCAACCAAACAAGTAGCCTCAGATTGTCTGTACAGCCAAGAGGCCATTATTTGGCATGACGTGTGCTTAATTCGCTATTCCCACCGTTCTTTTTTCTCCACCCTCGACTTCGGCGAACTGCCTCGAGCTTATTTTCGCTACGATGAAAATTTGAATATGTCGGACCAGAAAATGTTCATTTGGACATTAGAAGAGACGTTGCAACAGTTGATAGAGGCTGCCAAATTAGGTACCAAGAAATTTGCGACAAAACAAGCAAATTTTTCGGAGTTTCAAACGTTGTATAGTCTCGCACAGTGCACGCAGGATATGTCAAGTGAAGACTGCAATAGGTGTCTAAAAAAACTGAAAGAAGATATTCCATTGTACTGTCTTGGAAAGACAGGGGGAAGAGTTCGATATCCTCGTCGCAACTTGAGGTTCGAATCGTACCCTTTTAATACCATAGCCGTGGCAGAAGCTCCTCTCCAACTTAGTTCTCCTCCCCCTGCACCCATTCTAACTCCCATGGCTCATGGTTCAGGCGCCACAGTTGGAACTGAAAGCACCACTTTAGAGTCCTTGCAATTCAGTTTGGCCACCATCGAAGCCGCAACAAATAAGTTTTCACACGAGAATAGAATAGGCAAAGGCGGATTCGGAGAAGTTTACAAGGGCATTCTTTCTGATGGAAGAGAAATAGCAGTAAAGAGACTCTCAAAAATCTCAGGACAAGGTCCCCAAAAGAGAAGACTATTAAATTGGTTAGAGCGTTATAAAATTATAGGAGGAATTGCTCGAGGAATTCATTATCTTCATGAGTATTCTCGCCTTAAAGTAATCCATCGCGATCTCAAACCTAGCAATATTTTGCTAGATGACACCATGAATCCAAAAATATCAGATTTTGGCATGGCCAAGTTGATTGTTATAGATGCAAACCAAGAAAGTACCAATAGAATTGTTGGAACATGTGGTTACATATCTCCGGAATATGTAGTGCTTGGACAATTTTCTGAAAAGTCAGACGTCTTCAGTTTTGGAGTTACGGTTCTGGAAATTATTAGTGGAAAAAAGAATGCTAACTGTCATGAATCACATTATGTTGATGGACTCCTAAGTTATGCTTGGATGCAATGGAGGGATGAAAAATTCTCAGAGATATTAGATTCAAATCTGACAGAACTTGGTCCACATAGTGAAGTGATTAAATGCATCCAGATTGGTTTGTTATGTGTTCAAGAAAACCCACATGCTAGGCCTTCCATGGCTACAGTTGTTTCGTATCTTAGTAATGATTCAATTAAATTGCCATTTCCTAAAGAACCAGCATTCTTCATGCATGGTCAAATGGAATCAACTATTGGAGGTTCTAGTCAACAAACCAACAATTCCAAACCTTGCTCTATAAATGAAATGCCTATCAGTAATTTCCTTCCTCGCTAG 1722 0.4199 MSSLKLPSYFLLLVFLCFAATEAYEFNLTVCSSNPTSTRSRAYQSNLRTLLYSLSSNAAANKDFYNTTAGATNTTDAVYGLFMCRGDVSHDVCEDCVANATKQVASDCLYSQEAIIWHDVCLIRYSHRSFFSTLDFGELPRAYFRYDENLNMSDQKMFIWTLEETLQQLIEAAKLGTKKFATKQANFSEFQTLYSLAQCTQDMSSEDCNRCLKKLKEDIPLYCLGKTGGRVRYPRRNLRFESYPFNTIAVAEAPLQLSSPPPAPILTPMAHGSGATVGTESTTLESLQFSLATIEAATNKFSHENRIGKGGFGEVYKGILSDGREIAVKRLSKISGQGPQKRRLLNWLERYKIIGGIARGIHYLHEYSRLKVIHRDLKPSNILLDDTMNPKISDFGMAKLIVIDANQESTNRIVGTCGYISPEYVVLGQFSEKSDVFSFGVTVLEIISGKKNANCHESHYVDGLLSYAWMQWRDEKFSEILDSNLTELGPHSEVIKCIQIGLLCVQENPHARPSMATVVSYLSNDSIKLPFPKEPAFFMHGQMESTIGGSSQQTNNSKPCSINEMPISNFLPR 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1266 573 Gene3D - 142 245 IPR038408 -
Glsi03g1266 573 Gene3D - 24 130 IPR038408 -
Glsi03g1266 573 FunFam Cysteine-rich receptor-like protein kinase 25 143 245 - -
Glsi03g1266 573 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 338 - -
Glsi03g1266 573 Pfam Salt stress response/antifungal 153 243 IPR002902 -
Glsi03g1266 573 Pfam Salt stress response/antifungal 31 127 IPR002902 -
Glsi03g1266 573 FunFam cysteine-rich receptor-like protein kinase 10 332 529 - -
Glsi03g1266 573 ProSiteProfiles Protein kinase domain profile. 216 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1266 573 MobiDBLite consensus disorder prediction 547 573 - -
Glsi03g1266 573 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 130 - -
Glsi03g1266 573 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Glsi03g1266 573 SMART serkin_6 301 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1266 573 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Glsi03g1266 573 SUPERFAMILY Protein kinase-like (PK-like) 289 550 IPR011009 -
Glsi03g1266 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672|GO:0006468
Glsi03g1266 573 Gene3D Transferase(Phosphotransferase) domain 1 286 336 - -
Glsi03g1266 573 ProSiteProfiles Gnk2-homologous domain profile. 25 130 IPR002902 -
Glsi03g1266 573 Gene3D Transferase(Phosphotransferase) domain 1 337 529 - -
Glsi03g1266 573 MobiDBLite consensus disorder prediction 547 564 - -
Glsi03g1266 573 Pfam Protein kinase domain 351 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1266 Glsi-ChrGlsi03 74677680 74680748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1266 2 573 Receptor kinase-like Gene Family AT4G05200 38.336 4.29e-145 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi03g1266 Pkinase 3.7e-27 CL0016