LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g1249	ATGTCATTCCGAAGCATAGTTCGTGATGTAAGAGATAGTTTTGGGAGCTTATCTAGACGGAGTTTTGATGTCAGGCTGACTGGCCATCACAGAGGAAAGTCTCATGGTTCGTTTCAAGATTTGCATGACGAGCCTCTAGTAATTCAAAATAGTCGCTGGGCTAGCCTACCCCCGGAATTGCTATATGATGTAATTAGAAGGCTAGAGGAGAGTGAGAACACGTGGCCTGCCCGAAAGCATGTCGTTGCATGTGCTGCAGTTTGCCGGTCCTGGAGGTACATGTGCAAGGAAATTGTGAAGAACCCAGAGTTCTGTGGCAAGCTTACTTTCCCCGTGTCCCTGAAGCAGCCAGGACCAAGAGACGGAATGATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGATAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACGCGAAGAACAACTTACACTGAGTATATTATTTCCATGGATGCTGACATCATCTCTAAATCAAGTAGCACTTACATTGGAAAGCTAAGATCAAACTTTCTTGGTACAAAATTCATAATATATGACACACAGCCTCCATACACTTCTGCCAATATGCCCCCTCCTGGGACTGGGAGGACGAGCCGAAGGTTTTATTCAAAAAAGGTCTCACCAAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTGACATATGAATTAAATGTACTTGGGACACGAGGCCCAAGGAGGATGCACTGCATTATGCATTCAATACCAACCTCTGCACTAGATGCGGATGGCACAGTTCCTGGCCAACCGGAGCTGCTTCCTTGCTCTCTAGAGGACTCATTCCGGAGCATCTCCTTCTCAAAGTCTCTAGATCACTCTTCTGTTGAGTTCAGCAGCGCACGATTTTCTGAGATTGGGGGATCCTGCAATAATGAGGATGAGGATGGCAAGACAAGACCCTTGGTTCTGAAAAATAAAGCTCCAAGATGGCACGAGCAATTGCAATGTTGGTGCCTTAATTTCCGGGGCCGGGTAACCGTTGCATCTGTTAAAAACTTTCAGTTAATTGCAGCCTCCCAGCCACCGGCTGCTGCTGCTGCTAGTGCACCCATGCCATCTCAGCCTGCCCCGCCAGAGCACGATAAGATAATTCTGCAGTTTGGCAAAGTCGGGAAAGATATGTTCACCATGGATTACCGGTATCCTCTATCTGCATTCCAGGCTTTTGCTATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG	1302	0.4601	MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSHGSFQDLHDEPLVIQNSRWASLPPELLYDVIRRLEESENTWPARKHVVACAAVCRSWRYMCKEIVKNPEFCGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPALIVENGKFLLSAKRTRRTTYTEYIISMDADIISKSSSTYIGKLRSNFLGTKFIIYDTQPPYTSANMPPPGTGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCIMHSIPTSALDADGTVPGQPELLPCSLEDSFRSISFSKSLDHSSVEFSSARFSEIGGSCNNEDEDGKTRPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAASQPPAAAAASAPMPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE	433

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g1249	433	Gene3D	-	48	102	-	-
	Glsi03g1249	433	PANTHER	TUBBY-RELATED	40	431	-	-
	Glsi03g1249	433	SUPERFAMILY	Tubby C-terminal domain-like	102	433	IPR025659	-
	Glsi03g1249	433	SUPERFAMILY	F-box domain	49	97	IPR036047	GO:0005515
	Glsi03g1249	433	ProSitePatterns	Tub family signature 2.	418	433	IPR018066	-
	Glsi03g1249	433	Pfam	F-box domain	53	101	IPR001810	GO:0005515
	Glsi03g1249	433	Pfam	Tub family	114	428	IPR000007	-
	Glsi03g1249	433	FunFam	Tubby-like F-box protein	48	101	-	-
	Glsi03g1249	433	ProSitePatterns	Tub family signature 1.	351	364	IPR018066	-
	Glsi03g1249	433	Gene3D	Tubby Protein; Chain A	112	427	IPR025659	-
	Glsi03g1249	433	CDD	F-box_AtTLP-like	53	97	-	-
	Glsi03g1249	433	FunFam	Tubby-like F-box protein	110	433	-	-
	Glsi03g1249	433	PRINTS	Tubby superfamily signature	185	209	IPR000007	-
	Glsi03g1249	433	PRINTS	Tubby superfamily signature	333	350	IPR000007	-
	Glsi03g1249	433	PRINTS	Tubby superfamily signature	411	433	IPR000007	-
	Glsi03g1249	433	PRINTS	Tubby superfamily signature	237	264	IPR000007	-
	Glsi03g1249	433	PRINTS	Tubby superfamily signature	390	409	IPR000007	-
	Glsi03g1249	433	PRINTS	Tubby superfamily signature	351	367	IPR000007	-
	Glsi03g1249	433	PRINTS	Tubby superfamily signature	169	185	IPR000007	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g1249	Glsi-ChrGlsi03	74535817	74538697	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g1249	1	433	TUB Transcription Factor Family	AT1G76900	69.264	0.0	606

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Glsi03g1249		Tub	2.3e-116	CL0395