Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1228 ATGCCTAGCGTAATTGATAGCTCTGAATTCCGTAAAAGAAGGGCCGTGGAATTTCTTGTTACCAAAAGTAAAGCTGCTGGGGCTTCTCTTCTTGTCTCTCACTCTGCTACCTTTTGGTCCAACGCGAACCAACCCGTCGCCTTGTCGGAGAACAAATTGTCGCGCCTCAGGATGTATGAAAATCATGGGGTTTTGGATTTATTGGTCTTAAAATTAAGAATTGATGACGTTAGTAACTGGTTTTGGCAGTTGTTTTGTCAAGAATATGTGACCATGGGTACTTTTAAAATGTCAGAAATGGAAGAGTATTGCTGTTTCATTGGTGGCCTTTCATGGGCAACATCCGATAGAAAGTTGAAGGATTCATTTGAAAAATTTGGCAACCTTGTTGAGGCAAAGGTGGTTGTTGACAAGTTCTCTGGGCGCTCGCGTGGTTTTGGATTTGTAACATTTGATGAAAAGCAAGCAATGGAAGATGCTATTGAGGCTATGAATGGGATGGATTTAGATGGTCGAACTATTTCTGTTGACAAAGCTCAGTCTCAACGAGGATCAACTAGAGATGCTGGTGACCGCTACCGAGAAAGTGGTCGCAGTCGTGATCATAACCAAGATTATGGAGGTGGTCGAGGATCTAATAGTGGTGAATGCTTCAAGTGTGGTAAACCTGGTCATTTTGCTAGAGAGTGTCCTAGTGAAGGAGCAAGAGTTGGAAGATATGGTGGCAGGGAAAGTAGATATGGTGGCAGCAGAGGTAGTGGTCACTATGGCCCTGATAGGAATGCTGACCGTTCTTCTGGTGGGCGCAACAGGAATGCTAGTAGTCATGGAGATTCTGGAAGTGATCGATATTATCGTGATCGTTCTGGACCTTATGAGCGGCGAGGATCAGGAGGCTTTCGTTCTGGATAG 912 0.4452 MPSVIDSSEFRKRRAVEFLVTKSKAAGASLLVSHSATFWSNANQPVALSENKLSRLRMYENHGVLDLLVLKLRIDDVSNWFWQLFCQEYVTMGTFKMSEMEEYCCFIGGLSWATSDRKLKDSFEKFGNLVEAKVVVDKFSGRSRGFGFVTFDEKQAMEDAIEAMNGMDLDGRTISVDKAQSQRGSTRDAGDRYRESGRSRDHNQDYGGGRGSNSGECFKCGKPGHFARECPSEGARVGRYGGRESRYGGSRGSGHYGPDRNADRSSGGRNRNASSHGDSGSDRYYRDRSGPYERRGSGGFRSG 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1228 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 174 IPR000504 GO:0003723
Glsi03g1228 303 Pfam Zinc knuckle 216 232 IPR001878 GO:0003676|GO:0008270
Glsi03g1228 303 Gene3D - 95 212 IPR012677 -
Glsi03g1228 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Glsi03g1228 303 MobiDBLite consensus disorder prediction 173 214 - -
Glsi03g1228 303 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 97 299 - -
Glsi03g1228 303 FunFam Glycine-rich RNA-binding protein 10 213 271 - -
Glsi03g1228 303 SMART rrm1_1 104 177 IPR000504 GO:0003723
Glsi03g1228 303 MobiDBLite consensus disorder prediction 228 303 - -
Glsi03g1228 303 SMART c2hcfinal6 216 232 IPR001878 GO:0003676|GO:0008270
Glsi03g1228 303 Gene3D - 213 275 - -
Glsi03g1228 303 ProSiteProfiles Zinc finger CCHC-type profile. 217 232 IPR001878 GO:0003676|GO:0008270
Glsi03g1228 303 MobiDBLite consensus disorder prediction 184 205 - -
Glsi03g1228 303 MobiDBLite consensus disorder prediction 280 294 - -
Glsi03g1228 303 SUPERFAMILY RNA-binding domain, RBD 87 211 IPR035979 GO:0003676
Glsi03g1228 303 CDD RRM2_NsCP33_like 105 179 - -
Glsi03g1228 303 SUPERFAMILY Retrovirus zinc finger-like domains 208 234 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1228 Glsi-ChrGlsi03 74326599 74333048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1228 105 196 Eukaryotic Initiation Factors Gene Family AT4G34110 30.435 1.86e-07 50.4