LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g1216	ATGGAGAGACCCAAAACGTCTGAGGTGGTCAGAATGCTAGAAGCTGGTGGTTTGGCTGAAAAGTGGGAGCAATGGGAAAAAAAGGAGATGATTTTCAGGGAAGCAGGAGTCCTGAAACGAACTGCAATGCACTCAAATGCATATAGAATGGCATTGTTGTTTTGCCGTATGGTGGAGACAATCACAGGCGTCCAAGAGCGCGTCTATGACCCTGATTGCGGAGTCCTTAGTGCTCGCAAGTCTTTGTCTCTTTCCCCCAAGAAGAAGGAAAAGAAGAAGAAATTTCTCAACAAAATAGGATATATGGAGCGAGTGATTTCGTCATTCATGGGTTCGCTTCCTCTTTGGGCGATTTTAGTTTTTGATTTGTTGCTAAGGGTTTCTGGCAATGCGGAAGTGGAGTTGGAGTTCACCATGTTTGTTGATTGCAATACTTTATTGCTTCTGCATAGGACAGTTAATGCCCTGAATGCTTTGAAGACCAACATGATTGACCCTAACAATGTTCTTCAAAGCTGGGTTCATACTGATGTCAACCCCTGCAAGTGGCTTCATGTTGCATGCAATAGTGATAACAGTGTGACCCATGTGGAACTTTATAGCAATAATATAAGTGGAAAAATACCAGATGAGCTTGGAAACTTGACAAACTTGGTGAGCTTGGACCTTTACTTGAATCGATTAACTGGTCCTATTCCAGACACATTGGGAAACCTTAAACAACTACTTTTCCTGCGTCTCAACAAGAACAGCTTGTCAGGAAACATTCCCATGTCTTTGACTGCTGTTTCATTGCAAGTACTTTTTCAAAATAATCCTGGATTAAAACAACGAAAGGTCTCTCTATCTCCACCATTTTCTCCACCTCCACCAATTTCTCCAGCACTACCAGCTCATTCAGAAGTTAAAATGATTAGCATGGCTGTGCATCGTAACTTGCTTCGGCTGCGTGGTTTTTGCATGACAGCAACTGAGTGGTTGCTTGTGTATCCTTTCATGGTTAACAGAAGTGTAGCATGGTGTTTACGAGAGCGTCCAGGTGCTCAACCCCCACTTGATTGGCAGACACGAAAGCGTATAGCACTGGGAGCTGCTAGGGGGCTTGCTTATCTGCATGATGATTGTGACCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTCTTGGATGAGGAATTTGAAGCAGTTGTTGGAGACTTTGGTTTAGCAAAACTTATAAATTACAAAGACACTCATGTTACCACAGCTTTACGTGGTACAATTGGACATATAGCACCAGAGTGCTTCTCAACTGGAAAGACTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTCCTTGAACTAATAACTGCAAAGAGGGCTTTTGACCTCGCTCAACTTGCCAACAACCATGATCTCATGTTGCTTGACTGGGTGACAGGATTTGTTAAAGACAAGAGGTTGGAAACACTGGTTGATACTGATTTACAGGGAAATTATAATGAAGAGGTAGAGCAGCTAACTCAATTGGCCTTACTATGCACACAAGACTCCCCTCTGGAAAGACCCAAAATGTCTGAGGTGGTCAGAATGCTAGACGGTGATGGCTTGGCTGAAAAGTGGGAGCAATGGCAGAAGAAAGTTTTGCAGCGAGATTTCAAGCTCACCCATCACCCCAATTTTAACTGGTTGGTGGACTCAACTTCTCATATTCCACCGGATGAACTATCAGGTCCTCGATGA	1734	0.4314	MERPKTSEVVRMLEAGGLAEKWEQWEKKEMIFREAGVLKRTAMHSNAYRMALLFCRMVETITGVQERVYDPDCGVLSARKSLSLSPKKKEKKKKFLNKIGYMERVISSFMGSLPLWAILVFDLLLRVSGNAEVELEFTMFVDCNTLLLLHRTVNALNALKTNMIDPNNVLQSWVHTDVNPCKWLHVACNSDNSVTHVELYSNNISGKIPDELGNLTNLVSLDLYLNRLTGPIPDTLGNLKQLLFLRLNKNSLSGNIPMSLTAVSLQVLFQNNPGLKQRKVSLSPPFSPPPPISPALPAHSEVKMISMAVHRNLLRLRGFCMTATEWLLVYPFMVNRSVAWCLRERPGAQPPLDWQTRKRIALGAARGLAYLHDDCDPKIIHRDVKAANIFLDEEFEAVVGDFGLAKLINYKDTHVTTALRGTIGHIAPECFSTGKTSEKTDVFGYGVMLLELITAKRAFDLAQLANNHDLMLLDWVTGFVKDKRLETLVDTDLQGNYNEEVEQLTQLALLCTQDSPLERPKMSEVVRMLDGDGLAEKWEQWQKKVLQRDFKLTHHPNFNWLVDSTSHIPPDELSGPR	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g1216	577	Pfam	Leucine rich repeat N-terminal domain	154	189	IPR013210	-
	Glsi03g1216	577	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	379	391	IPR008271	GO:0004672\|GO:0006468
	Glsi03g1216	577	FunFam	Somatic embryogenesis receptor-like kinase 1	333	549	-	-
	Glsi03g1216	577	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	299	540	-	-
	Glsi03g1216	577	Gene3D	Transferase(Phosphotransferase) domain 1	334	549	-	-
	Glsi03g1216	577	SUPERFAMILY	L domain-like	152	269	-	-
	Glsi03g1216	577	Gene3D	Phosphorylase Kinase; domain 1	296	333	-	-
	Glsi03g1216	577	SUPERFAMILY	Protein kinase-like (PK-like)	299	529	IPR011009	-
	Glsi03g1216	577	Gene3D	Ribonuclease Inhibitor	152	286	IPR032675	-
	Glsi03g1216	577	SMART	serkin_6	247	529	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g1216	577	ProSiteProfiles	Protein kinase domain profile.	245	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g1216	577	Pfam	Protein tyrosine and serine/threonine kinase	300	529	IPR001245	GO:0004672\|GO:0006468
	Glsi03g1216	577	FunFam	Leucine-rich repeat receptor-like kinase	151	278	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g1216	Glsi-ChrGlsi03	74081511	74092954	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g1216	296	577	Receptor kinase-like Gene Family	AT1G71830	75.000	6.31e-150	443

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Glsi03g1216		PK_Tyr_Ser-Thr	4.3e-31	CL0016