Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1207 ATGATTAATAGTGCGCAGATTCAAGGAAAACAGGTTGTGCCTCGACAGGTTGGCTGGTCACCTCCTCAAATGTTTACAACTAAGATTAATGTAGATAGTTCTGTTATTAATGGCAATCAAGCTGCTTGTGGAGGGGTGTTCAGGAATGGAGCAGGGGGTTGGCTGAGGAGGGGTTTTGAACGTAATTTGGGCTCTTGTAGGATTACGAAGGCAGAGCTTTGGGGCATTCTTGCGGGCTTGAACTTGGCATGGGCTAATGGTTATAAAGATATAATTCTTGAAGCAGATTCAAGAGTGGCTGTTGATATGTGCGGGGTAAGCAAGCAACACCCTTCTGAGATTCCAGCTCCAGATTCCAAAATAAATAATCTAGAGAAGGAAAGGAAGAAAGGTTGGAACTACGCAGATTTCGCTTTTGAGCGTTTTCGTAGTTTACTTCGACTGTTTCCTTTGGACAACGAGTTAATGAAGATAAGAAATATGGAGCGAGTGATTCCGTCCTTCATGGGTTCGTTTTGGGCAATTTTAGTATTTGATTTCATGCTAAAGGTTTCTGGCAATGCAGAAGGAGATGCTCTGAATGTTTTGAAGAACAATTTGGCTGATCCTAACAATGTTCTTCAAAATTGGGATCCGACCGAAGTCAATCCCTGCATGTGGTTTCGTGTTAGGTGCAATAGTGATAATAGTGTCACCCGCCTTGATCTTGGAGATGAAAACCTGTCGGGTGAACTAGTTCCACAACTTGGTCAGCTCCCAAATTTGCAGCACTTCCGTCTCAACAATAACAACTTGTTAGGAAACATTCCCATGTCTTTGACCACTATTGCTTTTCTTCAAGTCCTTTTGTTTACTTCCATGGCTATTGTTGATGATTTGAGGGATGACATGTCCAAATTTTCGCTGCATGTTCTACTTTACAGTTTTCAAAATAATCCTGGATTAAAACAACAAAAGTTCTCTCCACCTCCACCAATTCCACGAATGCCATCAGCTCCTTCAGGTAACAGTGCTACTGCAACCATTGCTGGTGGGGTTGCTGCTGGTATTGCTCTGTCTTTTTCTGCCCTTGCAATTGCACTTGCTTATTGGCAAAGAAGGAAACAAGAGGATCATGATCATTACTCTGATGTTCCTGAAGTGCAAATGATTAACATGGCTGTGCATCGGAATTTGCTTCGACTTCGTGGTTTTTGTGTGACACCAAATGAACGGATACTTGTGTATCCTTTCATGGTTAACGGAAGTGTAGCATCATGTTTACGAGAGCGTCCAGAATCAGAGCCTCCACTTGACTGGCCAACACGGAAACGTATCACACTAGGAGCTGCAAGGGGCCTTGCTTATCTACATGAACATTGTGACCAGAAGATTATTCATCGTGATGTGAAAGCTGCAAATATAATGTTGGATGAGGAATTTGAAGCCGTTGTTGGAGACTTTGGTTTATCAAAACATATAGATTACAAAAATACTCATGCTACCACAGCTGTACGTGGTACAATTGGGCATATAGCACCAGAGTACCTCTCAACTGGAAAGACTACAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGACCTAGCAAGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTGAAAGGACTTCTTAGAGATAACAAGGTGGAAACACTGGTGGATGCTAATTTACAAGGAAATTATGATGAAGAGGAGGTAGAGCAGCTAATCAAAGTGGCCTTGCTATGCACACAAGGCTCTGCTACAGGAAGACCGAAAATGTCAGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGATGAAAAGTGGGAGCAATGGCAAAACGAGGTGATGTCCCAGCCATATTTCTATCACACGCATCACCCGGATGCAAATTGGATAGTAGACTCCACATCAGATTTCTCAGGAGATGGAATATCAGGTTCTAGATGA 1977 0.4259 MINSAQIQGKQVVPRQVGWSPPQMFTTKINVDSSVINGNQAACGGVFRNGAGGWLRRGFERNLGSCRITKAELWGILAGLNLAWANGYKDIILEADSRVAVDMCGVSKQHPSEIPAPDSKINNLEKERKKGWNYADFAFERFRSLLRLFPLDNELMKIRNMERVIPSFMGSFWAILVFDFMLKVSGNAEGDALNVLKNNLADPNNVLQNWDPTEVNPCMWFRVRCNSDNSVTRLDLGDENLSGELVPQLGQLPNLQHFRLNNNNLLGNIPMSLTTIAFLQVLLFTSMAIVDDLRDDMSKFSLHVLLYSFQNNPGLKQQKFSPPPPIPRMPSAPSGNSATATIAGGVAAGIALSFSALAIALAYWQRRKQEDHDHYSDVPEVQMINMAVHRNLLRLRGFCVTPNERILVYPFMVNGSVASCLRERPESEPPLDWPTRKRITLGAARGLAYLHEHCDQKIIHRDVKAANIMLDEEFEAVVGDFGLSKHIDYKNTHATTAVRGTIGHIAPEYLSTGKTTEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLRDNKVETLVDANLQGNYDEEEVEQLIKVALLCTQGSATGRPKMSEVVRMLEGDGLDEKWEQWQNEVMSQPYFYHTHHPDANWIVDSTSDFSGDGISGSR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1207 658 Gene3D Ribonuclease Inhibitor 186 327 IPR032675 -
Glsi03g1207 658 FunFam Somatic embryogenesis receptor-like kinase 1 412 628 - -
Glsi03g1207 658 Gene3D Phosphorylase Kinase; domain 1 349 412 - -
Glsi03g1207 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Glsi03g1207 658 SUPERFAMILY L domain-like 189 299 - -
Glsi03g1207 658 CDD RNase_H_like 29 103 IPR044730 -
Glsi03g1207 658 SUPERFAMILY Protein kinase-like (PK-like) 379 610 IPR011009 -
Glsi03g1207 658 Pfam Leucine rich repeat N-terminal domain 187 226 IPR013210 -
Glsi03g1207 658 Gene3D - 26 162 IPR036397 GO:0003676
Glsi03g1207 658 Pfam Reverse transcriptase-like 36 108 IPR002156 GO:0003676|GO:0004523
Glsi03g1207 658 SUPERFAMILY Ribonuclease H-like 28 106 IPR012337 -
Glsi03g1207 658 Pfam Protein tyrosine and serine/threonine kinase 363 609 IPR001245 GO:0004672|GO:0006468
Glsi03g1207 658 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 176 283 - -
Glsi03g1207 658 SMART serkin_6 354 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1207 658 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Glsi03g1207 658 ProSiteProfiles Protein kinase domain profile. 326 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1207 Glsi-ChrGlsi03 73859293 73873818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1207 380 658 Receptor kinase-like Gene Family AT4G33430 78.369 1.49e-154 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi03g1207 Pkinase 1.6e-33 CL0016