Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1203 ATGCATGATTATGAAGCTCGCGGAAGAATTATTATTGAAGTCTTGAAGAAGATAGGAAATATGAGGGGACTGATTTCGTCTTTGATGGGCTTGTTTCTTCTTTGGGCAATTTTAGTGTTTGATTTGGTGCTAAAAGTATCTGGCAATGCGGAAGGTGATGCCCTGAATGCATTGAAGACCAGCATGGCTGATCCTAACAATGTTCTTTCAAGCTGGGATCCTACCCTTGTGAATCCCTGCACTTGGTTTCATGTTACATGCAATAGTGATAACAGCGTGACCCGTGTTGATCTTGGAAATGCAAACCTTACGGGTCAACTGGTTTCACAGCTTGGTCAGCTTCCTAATTTGCAGTACTTGGAACTTTATAGTAATAATATAAGTGGAAATATCCCAGACGAGCTTGGAAATTTGACAGACTTGGTGAGCTTGGATCTTTACTTGAACAAATTAAATGGCGGCATCCCAGACACATTGAGCAACCTTAATAAACTACGTTTCCTGCGTCTCAATAATAACAGCTTGTCAGGAAACATTCCTGTGTCTTTGACTAAAGTTAATTCACTGCAAGTCCTTGATCTCTCTAACAACAAGTTAAAAGGAGATATCCCAGTCAATGGTTCATTTTCATTATTTACTCCCATCAGTTTTCAAAATAATCCTGGTTTAAAAGCTCAGAAGTTGCCTCCTGCCTCGCCAGTTTCTCCACCGCCACCAGCTCATTCAGGTAGCAGTAATACTGCAGCTATTGCTGGAGGAGTTGCTGCTGGCGCTGCTCTGTTGTTTGCAGGCCCTGCAATTGCACTTGCTTATTGGCGAAAAAGGAAACCACAGGATTATTTCTTTGATGTTCCTGCTGAGGAGGATCCCGAAGTTCACCTTGGTCAGCTTAAACGGTTTTCATTGCGAGAGCTGCAAGTTGCAACAGATAACTTTAATAACAAAAACGTTCTGGGTAGAGGTGGTTTTGGAAAAGTTTATAAAGGACGCTTAGCCGATGGTTCTCTAGTAGCAGTAAAAAGACTGAAAGAAGAACGCACCCAGGGTGGGGAGCTGCAATTTCAAACAGAAGTGGAAATGATTAGCTTGGCTGTGCATCGGAATTTGCTTCGGCTGCGTGGTTTTTGCATGACACCAACTGAACGGTTGCTAGTGTATCCTTATATGGCTAATGGAAGTGTAGCATCTTGTTTACGAGAGCGTCCAGGATCACAATCCCCACTTGACTGGTCAATACGGAAGCATATCTCATTGGGGGCTGCTAGGGGACTTGCTTATCTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTCAAAGCAGCAAACATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGACTTTGGTTTAGCAAAACTTATGGATTACAAAGATACTCATGTTACCACAGCTGTACGTGGTACGATTGGGCACATAGCACCAGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAATTGATAACTGGACAGAGGGCTTTTGACTTAGCACGACTTGCCAACGATGATGATGTCATGTTACTTGATTGGGTGAAAGGACTTCTCAAAGACAAGAAGTTGGAGACATTAGTGGATGCTGATTTACAGGGAAGTTATGATGAAGATGAGGTTGAGCAGCTAATCCAAGTCGCCTTACTATGCACACAAGGCTCCCCTACAGAAAGACCCAAAATGTCAGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAAAAGTGGGAGCAATGGCAAAAAGAGGAGATGTTCCGGCAAGATTTTAATTACACCCATCATCCCAATGCTAATTGGATGGTAGTAGACTCAACTTCACAAATCCCCGCAGATGAACTATCCGGTCCTCGATAA 1911 0.4291 MHDYEARGRIIIEVLKKIGNMRGLISSLMGLFLLWAILVFDLVLKVSGNAEGDALNALKTSMADPNNVLSSWDPTLVNPCTWFHVTCNSDNSVTRVDLGNANLTGQLVSQLGQLPNLQYLELYSNNISGNIPDELGNLTDLVSLDLYLNKLNGGIPDTLSNLNKLRFLRLNNNSLSGNIPVSLTKVNSLQVLDLSNNKLKGDIPVNGSFSLFTPISFQNNPGLKAQKLPPASPVSPPPPAHSGSSNTAAIAGGVAAGAALLFAGPAIALAYWRKRKPQDYFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFNNKNVLGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPGSQSPLDWSIRKHISLGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLQGSYDEDEVEQLIQVALLCTQGSPTERPKMSEVVRMLEGDGLAEKWEQWQKEEMFRQDFNYTHHPNANWMVVDSTSQIPADELSGPR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1203 636 SUPERFAMILY L domain-like 51 215 - -
Glsi03g1203 636 Gene3D Transferase(Phosphotransferase) domain 1 389 606 - -
Glsi03g1203 636 FunFam Somatic embryogenesis receptor-like kinase 1 389 606 - -
Glsi03g1203 636 SMART serkin_6 312 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1203 636 Gene3D Ribonuclease Inhibitor 48 232 IPR032675 -
Glsi03g1203 636 SUPERFAMILY Protein kinase-like (PK-like) 291 587 IPR011009 -
Glsi03g1203 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Glsi03g1203 636 ProSiteProfiles Protein kinase domain profile. 312 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1203 636 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 31 597 - -
Glsi03g1203 636 MobiDBLite consensus disorder prediction 223 245 - -
Glsi03g1203 636 Pfam Protein kinase domain 313 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1203 636 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Glsi03g1203 636 FunFam Somatic embryogenesis receptor kinase 1 281 388 - -
Glsi03g1203 636 Gene3D Phosphorylase Kinase; domain 1 281 388 - -
Glsi03g1203 636 Pfam Leucine rich repeat N-terminal domain 49 88 IPR013210 -
Glsi03g1203 636 FunFam Somatic embryogenesis receptor kinase 1 47 235 - -
Glsi03g1203 636 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1203 Glsi-ChrGlsi03 73779205 73788982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1203 28 636 Receptor kinase-like Gene Family AT4G33430 77.204 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi03g1203 Pkinase 1.1e-44 CL0016