Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1198 ATGGATATTTCAACCTTAAGCTCAACCCTAATCAGAATTCCTAATAAGCCCTTTAATTGCCTTCCACTCTCAAGAAATTGGCAAAGGCTTCATTCTGTTGTTTCATGCAGAGCTACAAAAAAACTTGGTTCTGATGAGGAAGATACCACCATTAATGGCAACTTCTACAAGGTACTATCTTTGAGCCCCAAGAGTGCAACCGTGGATGAGATAAAGAAAGCTTATAGATCAATGGCACTTCGGTACCACCCGGACGTGTGCCAGGATCCTTCGATGAAAGAGGAGTGGACGAGGATGTTCGTGCAGGTCAATGCAGCTTACGAGACACTCTCGAATCCCGTGCTTCGAGAAGAATATGATTGTGAACTGGGCTTGATCAGAAGAAGTTGTAGAAGGAGAAGAACTGACGGCGAGAGATGGAGAAGTAGGTGGCAAGAGCAAGTGGTTGAGTTGAAGAGAAGGTCTAATAGAAAAATGGCTCAAAAGGGGGGAGGATCGTCATGGGGAAGTAGAATGAGGGATCAAAACATGGAAAACCAGAATTAA 546 0.4414 MDISTLSSTLIRIPNKPFNCLPLSRNWQRLHSVVSCRATKKLGSDEEDTTINGNFYKVLSLSPKSATVDEIKKAYRSMALRYHPDVCQDPSMKEEWTRMFVQVNAAYETLSNPVLREEYDCELGLIRRSCRRRRTDGERWRSRWQEQVVELKRRSNRKMAQKGGGSSWGSRMRDQNMENQN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1198 181 ProSiteProfiles dnaJ domain profile. 54 123 IPR001623 -
Glsi03g1198 181 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 27 180 - -
Glsi03g1198 181 ProSitePatterns Nt-dnaJ domain signature. 100 119 IPR018253 -
Glsi03g1198 181 MobiDBLite consensus disorder prediction 160 181 - -
Glsi03g1198 181 SUPERFAMILY Chaperone J-domain 45 119 IPR036869 -
Glsi03g1198 181 Gene3D DnaJ domain 42 156 IPR036869 -
Glsi03g1198 181 Pfam DnaJ domain 54 120 IPR001623 -
Glsi03g1198 181 MobiDBLite consensus disorder prediction 151 181 - -
Glsi03g1198 181 CDD DnaJ 54 112 IPR001623 -
Glsi03g1198 181 PRINTS DnaJ domain signature 57 75 IPR001623 -
Glsi03g1198 181 PRINTS DnaJ domain signature 95 115 IPR001623 -
Glsi03g1198 181 PRINTS DnaJ domain signature 75 90 IPR001623 -
Glsi03g1198 181 SMART dnaj_3 53 115 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1198 Glsi-ChrGlsi03 73731120 73731665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1198 56 126 C2H2 Transcription Factor Family AT1G74250 39.726 2.00e-06 45.4