Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1188 ATGAGAATATCTGCGATTTCACCTAGCAGTCTTAGGCCAGTTTTATTTGCAAAATCTCATGCTCTAGCAACTTACAATGCTTTCAATTTGAGTTGCATCATGGGGTTTCTTCCACTTTTTATTCTTAAACAGATTCTTTTTGTAGTTCTTGCCGTATTAAACACACTTATCATAGCTCAAGAAGGTCCTTTTGGCGAGAGAGATGCCCTTAATGGTCTCAGGGCCACTTTTAATGACCCTATTCTGAATAATAATTGGACTGGCTCCCACTGCAATGCGAATCAACCATCAAGATGGATCGGTATTCAGTGCGCCAATGGTCGTGTCACCAGCATAGAATTGGACGGTATGGGGCTCGCCGGGGAAGTCAATGTCGGTGCATTCTTCAACTTTGAAGAATTGTCTATTTTGAGCTTCAAGGACAATTCCCTAAAGGGAAATATGATGAATTTCTCCGATAATCACCAAATGAAGTACATTGATTTGTCAGGCAACGAGTTTAAAGGGCCCATATCAAGATCCCTTCTGAATCTTAACCTCTTGGAAACGCTGTTGCTTCAAGATAATAGGCTCACAGGTTCAATGCCTGAGTTTAATCAACCAAATTTGAAAATAATCAATGTCTCAAACAATGATCTTCAGGGAAGAATCCCAAAAACTCTTCAATCATTAGACCCGGCTTCATTTTCTGGCAATCCCAGATTATCTGGTCTTCCTTCTCTCAATCCCTGCAGCTCTAGCTTGAAATCTCCTATTCCAGCACCTCTAAAAGACCAAGAAAACCTTGATGCCCCGAAACCTTCAAGTTCAGATAAAGATCACACTTCCAATATTCTAATAATTTTCAATGTGGTTCTTCTCTTGGCAATAATATTGCTAGTGATTCTTTACTTCAACACAGCTAAGAAGCTCGGTAAAATCATGAAGGAGCAGATTCGCATAAATAAAGATGTGGAGACTGCTCATAAGAAGGTAGAGATGGGAGATCAGAGGTCAGTGATGGCAGTAGAAGAGAAAAAGGAGCTTATATTCTTTAAAGATGAATTAAATTTCCAAATGAATGAACTTCTAAAAGCTTCTGCTGAGGCACTTGGTCAGGGAATCATGGGGAATAGTTATAAGGCTATGCTGAATGGAGGACCTTCCATCGTTGTAAAGCGGCTAAGGGACTTGAAACCACTGATTATGGAGGAATTTTCAAAGCAATTGCATCTGATTGCTGATCTGAAGCACCCAAATTTGTTGCCTTTGCTTGCTTACTACTATTCCGGAGATGAGAAGTTGCTGCTCTACAAATATGCAGAGAATGGAAGTCTTTTCTTCCGACTTCATGATGGCAGAGGTGGAAACCGGATTCCATTCAAATGGAACTCAAGATTGTCAGTGGCACGAGGCGTAGCTCGAGCAATGGCATACCTGCACATCAACAGCAAGTCCCCTAGCATTGTCCCCCATGGAAATTTGAAGTCCTCCAATGTCCTCCTAGATGAAAATGGCACAGTTCTAGTCTCAGACTACGGCCTATCCTCCCTCGTAGCACAACCCATTGCAGCTCAACGCATGGTAGTTTACAAATCACCCGAATATGGGTATGCCAGAAAAGTTTCAAAGCAATCTGATGTATGGAGCTATGGCAGTCTCATCATAGAACTCTTAACAGGCAGGTTATCTGCATGTTCAGCCCCAGCTGGAGTGAGTGGGTTGGATCTTTGTAGTTGGGTTCACAGGGCAGTGAGGGAAGAGTGGACTGCTGAGATATTTGACAAGGAGATTTCTGGGGAAAGAAGTGCTCTTCCTGGGATGCTGAGATTGCTTCAGATTGCCATGCGTTGCATTGATAGGTTCCCAGAGAATAGGCCTGAAATGAGAGAGGTGGTGAGGGAACTGGAGAAAATTGAGGCTCCATCGGTGTCTGAGGATGAAGATGAAGATGATGCATCTGGTGATAGGTCTATAACTGATGATTCTCTTTCTACCAGTACCTCTGGGATCATTGGAGATGAGAGCGGAAACAAAAGGTGCCATGTCTGCGATATATTCTCAGATTTGAGGCTTAGGTTTTCGAGATTTCGGACAGCTGAAATTTGGGATTCTATGTTTGCTGTAGCTTCAATTAGAGGAAGCAGTCGGGGTATTTCCTGCACATTCATAAGAGATAACTTATTCCGGTTCTGCTGTCTAGTTGAAAATGGTCCAACTGTCACGCCATCCCATACGGCAATCTCATGCTCCCAATCTTTTACTCGTGATATGTGCATACATCCAAGAACCTACAGTACAGCAAGGCATCTTCCGAGAGTTGCATCTGTATCTTCTCCATCAAATTTTCTTTTTGTGCAGAGATGGAACATATTTGTACAGGGTATTCTTAGAAACTGGCTACCTGCCAGATACATGAGTAATACACCATTTGAACTTAAGACAGACAATGATGTTGTAAGGTTCTCTTTTGGTAAGTTGCCTGATAATAGTAATTCCACCACAAGGGGCAAGAAGAAGATGAAGGTTAAAATGTCTAGAAAGGCTAAATTGAATGAGCTCAGATTCTATCGTTTGAAGGCCAAAAAGAAGATGAATTCTCCAAATCCAGAAGTGAGAATTAGATATAAGCTTGAAAAGGCCAAGCGAAAGGAAGCATGGTTGATTGAGAAACTGAGGAAATTTGAGGTACCAAAATCTGTGGAAGAAACTTATGATCCTGAAATTTTGACAGAGGAGGAGAGGCATTACCTGAAGCGTACCGGTGAGAAAAAGAAAAACTACGTTCCAGTTGGGAGACGAGGAGTGTTTGGCGGGGTAGTTCTAAACATGCATCTTCACTGGAAGAAGCATGAGACAGTAAAGATAATCTGCAAGCCTTGCAAACCAGGACAGGTTCATGAGTATGCTGAAGAGCTTGCTCGATTGAGCAAAGGCATTGTGATTGACATCAAGCCCAACAATACTATAATTTTCTACCGTGGAAAAAACTATGTACAGCCAAAAGTAATGTCACCTCCAGATACACTATCAAAAAATAAGGCCTTGGAGAAGTATAAGTACGAGCAGTCCCTTGAGCATACAAGCCAGTTCATTGAAAAGTTGGAGAAAGAGCTTGATGAGTATCATCAGCACCTTGAACGGTTTAAAAATGGAAGAGTCATACCTGTCTAG 3153 0.4193 MRISAISPSSLRPVLFAKSHALATYNAFNLSCIMGFLPLFILKQILFVVLAVLNTLIIAQEGPFGERDALNGLRATFNDPILNNNWTGSHCNANQPSRWIGIQCANGRVTSIELDGMGLAGEVNVGAFFNFEELSILSFKDNSLKGNMMNFSDNHQMKYIDLSGNEFKGPISRSLLNLNLLETLLLQDNRLTGSMPEFNQPNLKIINVSNNDLQGRIPKTLQSLDPASFSGNPRLSGLPSLNPCSSSLKSPIPAPLKDQENLDAPKPSSSDKDHTSNILIIFNVVLLLAIILLVILYFNTAKKLGKIMKEQIRINKDVETAHKKVEMGDQRSVMAVEEKKELIFFKDELNFQMNELLKASAEALGQGIMGNSYKAMLNGGPSIVVKRLRDLKPLIMEEFSKQLHLIADLKHPNLLPLLAYYYSGDEKLLLYKYAENGSLFFRLHDGRGGNRIPFKWNSRLSVARGVARAMAYLHINSKSPSIVPHGNLKSSNVLLDENGTVLVSDYGLSSLVAQPIAAQRMVVYKSPEYGYARKVSKQSDVWSYGSLIIELLTGRLSACSAPAGVSGLDLCSWVHRAVREEWTAEIFDKEISGERSALPGMLRLLQIAMRCIDRFPENRPEMREVVRELEKIEAPSVSEDEDEDDASGDRSITDDSLSTSTSGIIGDESGNKRCHVCDIFSDLRLRFSRFRTAEIWDSMFAVASIRGSSRGISCTFIRDNLFRFCCLVENGPTVTPSHTAISCSQSFTRDMCIHPRTYSTARHLPRVASVSSPSNFLFVQRWNIFVQGILRNWLPARYMSNTPFELKTDNDVVRFSFGKLPDNSNSTTRGKKKMKVKMSRKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEAWLIEKLRKFEVPKSVEETYDPEILTEEERHYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVQPKVMSPPDTLSKNKALEKYKYEQSLEHTSQFIEKLEKELDEYHQHLERFKNGRVIPV 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1188 1050 Pfam CRS1 / YhbY (CRM) domain 903 987 IPR001890 GO:0003723
Glsi03g1188 1050 ProSiteProfiles Protein kinase domain profile. 358 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1188 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 53 638 IPR046959 -
Glsi03g1188 1050 SUPERFAMILY Protein kinase-like (PK-like) 362 633 IPR011009 -
Glsi03g1188 1050 Coils Coil 1018 1045 - -
Glsi03g1188 1050 MobiDBLite consensus disorder prediction 635 649 - -
Glsi03g1188 1050 Gene3D Phosphorylase Kinase; domain 1 323 433 - -
Glsi03g1188 1050 MobiDBLite consensus disorder prediction 633 662 - -
Glsi03g1188 1050 SMART serkin_6 358 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1188 1050 SUPERFAMILY YhbY-like 902 997 IPR035920 -
Glsi03g1188 1050 SUPERFAMILY L domain-like 67 241 - -
Glsi03g1188 1050 Pfam Protein tyrosine and serine/threonine kinase 362 629 IPR001245 GO:0004672|GO:0006468
Glsi03g1188 1050 MobiDBLite consensus disorder prediction 249 273 - -
Glsi03g1188 1050 ProSiteProfiles CRM domain profile. 901 998 IPR001890 GO:0003723
Glsi03g1188 1050 SMART CRS1_YhbY_2 903 987 IPR001890 GO:0003723
Glsi03g1188 1050 Gene3D - 902 1000 IPR035920 -
Glsi03g1188 1050 Gene3D Transferase(Phosphotransferase) domain 1 434 655 - -
Glsi03g1188 1050 Gene3D Ribonuclease Inhibitor 65 246 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1188 Glsi-ChrGlsi03 73588709 73600167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1188 27 656 Receptor kinase-like Gene Family AT5G58300 35.401 2.11e-102 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi03g1188 PK_Tyr_Ser-Thr 3.3e-28 CL0016