Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1172 ATGGATTCTACCTTGTCTCTGTCAGCCACGAAAATGGCGCTTTCAAGTTCAACTCTGACTCATTTCACATCCAGAAACCTCCTACATCGCAGACTCAAATGCTTTGCTTACAACCACAGCATTCCCACATCCCCCTTTCTCGCTTCTTCCGCCTCCTCCAACTCGCCGAGGAGATTCTCTGAGCTGGCCCCCTCAAGACGCTGTCGTTTGCGCTGCGTTTCGGCCTCCGCTGCTTCTAGTGATGCCAATTCCGAAGGTGCTGAAGAACTTTTGGCAAATTCACCTGATGTTATTGTTCTCGATGTTGGGGGAATGATGTGCGAGGGATGTTCATCAAGCGTGAAAAAACTTCTAGAAAGTCGGCCTCAAGTGTCATCTGCTAGTGTAAATCTAACAACCGAGACAGCAATAGTTTGGCCAGTATCTGAAGCTAAAGCTGCATCAAATTGGCAAAAGCAATTAGGAGGTGCACTGGCAGAGCATTTAACTAGCTGTGGTTTCCAGTCTAGTCTTCGAGGTCAGGAAGATAGCAATTGA 537 0.4767 MDSTLSLSATKMALSSSTLTHFTSRNLLHRRLKCFAYNHSIPTSPFLASSASSNSPRRFSELAPSRRCRLRCVSASAASSDANSEGAEELLANSPDVIVLDVGGMMCEGCSSSVKKLLESRPQVSSASVNLTTETAIVWPVSEAKAASNWQKQLGGALAEHLTSCGFQSSLRGQEDSN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1172 178 ProSiteProfiles Heavy-metal-associated domain profile. 96 170 IPR006121 GO:0046872
Glsi03g1172 178 FunFam Copper-transporting ATPase PAA1, chloroplastic 96 171 - -
Glsi03g1172 178 SUPERFAMILY HMA, heavy metal-associated domain 94 144 IPR036163 GO:0046872
Glsi03g1172 178 ProSitePatterns Heavy-metal-associated domain. 102 131 IPR017969 GO:0046872
Glsi03g1172 178 CDD HMA 99 170 IPR006121 GO:0046872
Glsi03g1172 178 Gene3D - 96 174 - -
Glsi03g1172 178 Pfam Heavy-metal-associated domain 99 144 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1172 Glsi-ChrGlsi03 73277138 73286040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1172 94 172 Primary Pumps ATPases AT4G33520 73.418 3.93e-37 126