Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1170 ATGGCGGACCGTGCTTCTTACGGGATGGGTCCTCGATTAGATTTTCGGCAATTACAATTTGAAGCTCAGCATCGGTGGCTGCGGCCTGCTGAAATTTGTGAAATTCTTCGTAACTATCAGATGTTTCAAATCACATCAGAACCTCCAAACAGGCCCCCAAGTGGTTCACTTTTTCTTTTTGACCGGAAGGTGTTGAGATATTTTAGAAAGGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGACAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAAACGGATATGATGCACATAGTTTTTGTCCACTATTTGGAAGTTAAGGGTAACAAAACAAATATTGGAGGAAACATAGATACTGATGAGGTTACATCAAATTCTCAAACGGGCAGATCTCCATCATTTGGGCTTTCTACAAATTATAGTACTGTGCCTTCAAGAAGTACAGATTCCTTGAGCCCGACCAGCGGTTTATCATCCTTATGTGAAGATGCTGATTCAGGTGATGGTGGACAGTCATCAATTTCTGGAACAAATTATATCCCACTTGTTCAGGGAGATACATCTAGAGGAAGCAATAATTCTTTCATTGAGGACCAAAATGTGCATGGCATGACCTCCTGGGGCAGCGTCTTGGATCAATGTACTGCTGGATTACATGCTGATCCTTCTCTTGTATCATTTCCTTCCATCCCATCCAGTTCAACAGGAAACATCCTTGAACAGCAACATAATGTTCTGGGTGACCTTTTAGCAAGCAAGGGTGCCTTCACTGAGGAGGCAGGGAGATCTCAGTCTCTCCAAACAAATTGGCAGATTCCTTTTGAAGACAATTCAGGACAGTTGCATAAATGGCCCATGTCATATTTGTTAAGTTCTGAATTTGGATCTGATTTTGGCACTGGTTTACTGGACCGGGAATCTCATGCAAGTCCTGAAATTGCTCCTGACCTGTTAACTTTTAGCGGCCAGTCAAGAGAGCAGCCTGTGCAGGAAAACTTCCCACAAGAGTATACAGACGAACAATCTCAATTTTCAGTGAAATCTAATTCTGAGAATGAAGTTCCTTCAGGAGAAAGTATCAACTATGCCTTGACTGTGAAGCGCACATTATTAGATGGAGAGGATAGCCTGAAGAAAGTTGACAGCTTCTCTCGGTGGGTCACTAAAGAACTGGGAGAGGTGGATGGTCTGCATATGCAGTCCTCACCTGGTATTTCATGGAGCACAGATGAATGTGGGCATGTGATAGATGAGTCCTCACTGAGCCCCTCCCTCTCTCAGGACCAGCATTTTAGCATATATGATTTTTCACCTAAATGGGCTTACGCTGAATCGGATACTGAGGTTTTGATTATTGGAACATTTTTGAAGAGTCGACCAGAGGTAGCAAACTGTAACTGGTCATGTATGTTTGGGGAAGTCGAGGTTCCTGCTGAAGTCTTAGCCAATGGAATCTTGTGCTGTTTTGCTCCACCTCATAAGGTTGGAAGGGTCCCCTTCTATGTAACATGTTCCAATAGGGTAGCATGTAGTGAAGTGAGGGAATTCGAATACAGAGAGGGCTTTGTTGAAGATGTTGATATTGTTGATTTTTACAGCAGTTCATCTGAAATTCTGCTTCACATGCGACTGGATGAGTTACTTTCTTTAAAATCAGTGCACCCATCAAATGACGCATTTGACAGTGATAGAGAGAAAAGAAGCTTGATTTTTCAGCTTATTTCATTAAAGGAGGAAGAAGAGTATTCAAATAAGGAAGAGCCAACTTTAGATAAGGATTTGTCCCAACACAAAGTAAAGGAGCATCTATTTTACAGGCAGACTAAAGAGAAGCTGTACTCATGGTTACTTCACAAAGTAGCTGAAGATGGTAAAGGGCCAAATGTATTAGATAAGGAGGGACAGAGTGTCCTACATTTAGCAGCTGCTCTTGGTTATGATTGGGCCATAACACCAATTATAACTGCTGGAGTTAGTATTAATTTCCGGGATGTGAATGGATGGACGGCTCTGCATTGGGCTGCCTTCTGTGGCAGAGAGAGGACAGTTGCTCTCCTTGTCTCCATGGGTGCATTTCCTGGAGCCTTGACAGATCCATCTCCAGCATTTCCTTCTGGTAGAACACCTGCAGATCTTGCTTCTAGCAATGGACACAAAGGACTCTCAGGTTTTCTTGCAGAGTGTTCATTAACTAGTCACCTTGCATCCCTCACAGTGGATGATCTAAAGGAAGATGGTGGGCAAGAAGCTTCAGGAATTAAAGTGGTACAGACAGTTTCAGAACGTTCTACGACACCTGTGTTTTGTGGTGATATGCCAGATTCCCTCTGCCTTAAGGATTCTCTTACTGCTGTTCGTAATGCTACACAAGCTGCTGATCGTATATATCAAGTATTCAGAATGCAGTCATTCCAGAGGAAACAGTTAACTCAGAATGAAGAAGATGAGTTTGGATTGTCAGATCAGCGAGCTCTTTCCTTTCTAGCTGGTAAGGCTCGCAAGGCTGGACAAGGGGATGGGTTAGCCCATGCTGCTGCAACACAAATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCCTCATAATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTTAGAGGTCACCAGGTAAGGAAGCAGTATAAATCAATCATCTGGTCTGTAGGAATCCTGGAGAAGGTCATATTGCGGTGGAGACGTAAAGGCAGTGGTTTACGTGGATTTCGACCGGATTCTGTTAACAAGGAACCCAGCCAGCCAAGCCATTCTTTGAAAGAGGATGACTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAGGAAAGGTTCCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCGCGGGCTCAATACCGGCGGGTTCTGAATGTTGTCGAGGACTTCCGTCAAACCAAGTCATCCAATATGGACTTGATAAATTCAGAAGAGACAGTCGATGGTGTAGAGCAGCTGATTGATATTGACATGCTTTTAGATGATGACAATTTCATACCCATAGCATTTGATTGA 3144 0.43 MADRASYGMGPRLDFRQLQFEAQHRWLRPAEICEILRNYQMFQITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNENFQRRSYWMLETDMMHIVFVHYLEVKGNKTNIGGNIDTDEVTSNSQTGRSPSFGLSTNYSTVPSRSTDSLSPTSGLSSLCEDADSGDGGQSSISGTNYIPLVQGDTSRGSNNSFIEDQNVHGMTSWGSVLDQCTAGLHADPSLVSFPSIPSSSTGNILEQQHNVLGDLLASKGAFTEEAGRSQSLQTNWQIPFEDNSGQLHKWPMSYLLSSEFGSDFGTGLLDRESHASPEIAPDLLTFSGQSREQPVQENFPQEYTDEQSQFSVKSNSENEVPSGESINYALTVKRTLLDGEDSLKKVDSFSRWVTKELGEVDGLHMQSSPGISWSTDECGHVIDESSLSPSLSQDQHFSIYDFSPKWAYAESDTEVLIIGTFLKSRPEVANCNWSCMFGEVEVPAEVLANGILCCFAPPHKVGRVPFYVTCSNRVACSEVREFEYREGFVEDVDIVDFYSSSSEILLHMRLDELLSLKSVHPSNDAFDSDREKRSLIFQLISLKEEEEYSNKEEPTLDKDLSQHKVKEHLFYRQTKEKLYSWLLHKVAEDGKGPNVLDKEGQSVLHLAAALGYDWAITPIITAGVSINFRDVNGWTALHWAAFCGRERTVALLVSMGAFPGALTDPSPAFPSGRTPADLASSNGHKGLSGFLAECSLTSHLASLTVDDLKEDGGQEASGIKVVQTVSERSTTPVFCGDMPDSLCLKDSLTAVRNATQAADRIYQVFRMQSFQRKQLTQNEEDEFGLSDQRALSFLAGKARKAGQGDGLAHAAATQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKSIIWSVGILEKVILRWRRKGSGLRGFRPDSVNKEPSQPSHSLKEDDYDFLKEGRKQSEERFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKSSNMDLINSEETVDGVEQLIDIDMLLDDDNFIPIAFD 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1170 1047 ProSiteProfiles Ankyrin repeat region circular profile. 695 720 - -
Glsi03g1170 1047 MobiDBLite consensus disorder prediction 940 960 - -
Glsi03g1170 1047 Pfam IPT/TIG domain 462 539 IPR002909 -
Glsi03g1170 1047 Gene3D Immunoglobulins 455 550 IPR013783 -
Glsi03g1170 1047 FunFam Calmodulin-binding transcription activator 2 870 918 - -
Glsi03g1170 1047 ProSiteProfiles Ankyrin repeat profile. 695 727 IPR002110 GO:0005515
Glsi03g1170 1047 Pfam IQ calmodulin-binding motif 896 915 IPR000048 GO:0005515
Glsi03g1170 1047 Pfam IQ calmodulin-binding motif 872 891 IPR000048 GO:0005515
Glsi03g1170 1047 FunFam Calmodulin-binding transcription activator 2 455 551 - -
Glsi03g1170 1047 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Glsi03g1170 1047 SUPERFAMILY Ankyrin repeat 651 757 IPR036770 -
Glsi03g1170 1047 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Glsi03g1170 1047 MobiDBLite consensus disorder prediction 144 207 - -
Glsi03g1170 1047 Gene3D - 871 918 - -
Glsi03g1170 1047 Gene3D - 623 766 IPR036770 -
Glsi03g1170 1047 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1009 - -
Glsi03g1170 1047 SMART CG_1_2 18 136 IPR005559 GO:0003677
Glsi03g1170 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 921 IPR027417 -
Glsi03g1170 1047 SUPERFAMILY E set domains 462 548 IPR014756 -
Glsi03g1170 1047 ProSiteProfiles IQ motif profile. 871 900 IPR000048 GO:0005515
Glsi03g1170 1047 ProSiteProfiles Ankyrin repeat profile. 662 694 IPR002110 GO:0005515
Glsi03g1170 1047 SMART iq_5 893 915 IPR000048 GO:0005515
Glsi03g1170 1047 SMART iq_5 870 892 IPR000048 GO:0005515
Glsi03g1170 1047 Pfam Ankyrin repeats (3 copies) 643 720 IPR002110 GO:0005515
Glsi03g1170 1047 SMART ANK_2a 695 724 IPR002110 GO:0005515
Glsi03g1170 1047 SMART ANK_2a 662 691 IPR002110 GO:0005515
Glsi03g1170 1047 SMART ANK_2a 734 763 IPR002110 GO:0005515
Glsi03g1170 1047 ProSiteProfiles IQ motif profile. 894 918 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1170 Glsi-ChrGlsi03 73243166 73255662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1170 1 1028 CAMTA Transcription Factor Family AT5G64220 53.882 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Glsi03g1170 CG-1 1.8e-51 No_clan