Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1158 ATGGGAGTGCAGGGTCTCTGGGAACTTCTTGCCCCCGTTGGTCGCCGGGTCTCCGTCGAGACCCTTGCCGGGAAGAAGCTCGCCATTGATGCGAGCATATGGATGGTGCAGTTTATGAAGGCGATGCGGGATGAGAAGGGAGAAACTATTCGCAATGCCCATTTGCTCGGCTTCTTTCGTCGAATTTGCAAGCTCTTGTTCCTGCGGACCAAGCCTGTTTTCGTCTTCGATGGTGGCACCCCTGCTCTCAAGCGGCGGACTGTGATTGCACGTCGGAGGCAGCGGGAAAATGCTCAGGCCAAAGTTCGAAAGACTGCCGAGAAATTGCTTCTCAATCATTTAAAGACATTGAAATTGAGAGAACTGGCTAATGATATTAAGAACCAGAGGTTGAAGCAGGATAGTGATACTAAGGGTGAGAAAAAATCTGATCAGATAGACTTGGCTGGTTGTGCTGTAGTAAGAAGGAATGAAAAAGAGCTAGATAAAATAACTGGAGCTAAATTTGCACCCGAGGAGGACACAAATTTATCTGAGACTATGTTATCAAGAAGTTGCAATCAGAAGGAGCTTGATGAAATGTTGGCAGCATCTATTATTGCGGAGGAAGATGGATTATTAGCCAGAAAAGGAGTGACATCTGCTGCAGTTCATCTTTCTGAGGAGGAAGGTGATGCGGATGTAGAAATATTACTGCCAGAATTCAATTCTGAAGTTGATCCGTCTGTGTTAGCTGCTTTGCCGCAGTCAATGCAACTTGAGATTCTCTCTCAGCTTAAAGGAAAGAAAACAGAAGGACCACTGAATGAACTTGAGAATCAGAAACTGTATGAGGTCAATGACAAGGGCAAGGGCAAGGGGATTCAGTTGGATGAAATTGGTGCAGTAGGATGTAGCTCAAGAAGCGATGATGTGATAACAAGGGAGCACACTCAGGACAAAGTTGATGAAATGTTGGCTGCATCTATTATGGCGGAGGAAAATGAGAAGATAGTAAATAATGCATCAACATCTGGGGCTTTCATCTCGGAGGAAGAGGATGACATTTATGATGAAGATGAAGAGATGATCCTGCCAGAAATGCATGGTAAAGTTGATCCTTCCATTCTAGCCTCTTTGCCTCCATCAATGCAACTTGACCTTCTTGTTCAGATGAGAGAGCGACTAATTGCAGAAAACAGACAGAAGTATCAGAAAGTGAAGAAGGATCCTACAAAATTCTCTGAGCTACAAATACAGGCTTACCTTAAGACTGTTGCTTTCCGTCGGGAGATAAATGAAGTGCAGAAAGCTGCCGCAGGGGGAGGAGTAGCTGGTGTACAGACTTCACGGATTGCATCTGAAGCTAACAGAGAATATATATTTTCAACATCTTTTACTGGTGATAAACAAGAACTTACCTCTACCAAATTAGAGCAAAATAAAGCTACACAGCCAAAGAGTATGGGAAACCATCCTTCACAGGGCTTTGTAAATAATACTGAGCCTGCCAATGATTCTAGTACTTCACGTGGATTCGTTCGCAATGAACCTGGAGGGGATTTAGATGAGAATATTCAGACATATCTGGATGAGAGGGGCCAGTTTCGAGTTAGTAGACTTAGAGCAATGGGTATGCGTATGACCCGTGATATACAAAGGAATTTAGATTTGATGAAAGAGATTGAGCAGGAGAGAACAGATGCAGACAAGGCTGCAAATAATAACACTTTTCTTAATGGAGAGAAAATTTGTGCATCAAAAGGTTCTAGCAATCAAGTTGTTGGTACATCAGACAAGACAAATGTTGACTTAGCTGGAGAGAATATGAGGAATGAGCACTCTGTATTAGGAGATGCTTCTATAGAGATATCCTTCGTGGATGATGATGAGAATAAGTGTCTTGATGGTGATGATGACTTGTTTGCTAGTTTAGTAGCAGGTAATTCAGGGACAAATTCTTGTGCTGAAAATACCTTATTGAAAGAACAAGTTTCTGATTCTAATTCAGATTGTGACTGGGAAGAAGGAATTATTGAAGGTCAGCGTAATGTTTTTTCTGGTAATGTAAAAGGAGAAATGAACCCTTCTGTTGCAAAAGATAATTATAGTGATGAGAGTGATGTAGAATGGGAGGAAGGAGTTCATGATGGTTCTAATAGCACATTATTGCGCGCAGCTGAGCCAGGAAAAATAGCATCTCGAGGTTGCTTGGAAGAGGAAGCTGATTTGCAGGAGGCAATAAGGAGAAGTCTTGAGAACATAGGGGAGAGAGAACTTAATTGCACATCATCCATATATGAGCATTCAAAGACTGATGAGGTCAAATCAGATTATGCATCAAACCATGAAAATTTAGTTGGTTCTGGAGTGAAAGATTTTTATGAAGATAGTGGAGTACAAAATAGAGAAGTTAGTATGGGTGCGTCCACTTTGCAAAGGGAAGGCGGTACTGAACAAAATGACTCATATTATAAAATTATAGATGGTAATGACAAGCTGGATAGTGTGGCAAGAAATAACCTACAAACTTCCCAGTCTCGTCGGGGACAGTCAGAGTCATTTGTGGCATTTAATTCTGAGAAGATGGGGACATCAGTTAAGAAGCCGTGTGCAGTGGACATGGGATCTCATTCTGAAGATCTATTGCCCAATGCAAATGAAAGGATGAAGAATGATATCCATATGGTTGCAGAGCAATTCTTGGGTACCTTAAATGAAGATGGTAAGGGGTCTACCTATTGTAACAAGTCTTTCAAGGTTAACTCCCTTGGTGCTTCAGAAGAGGACAAAAACAATTATAGTAATGAAGGTGAACCTTTCAATAATTCTTCTAAGATGTCCAAGCCTGTTGCTCCTTTTGTGGATTCATCCTTAGAAGAGTCAACAGAAGACCTTGACACTCAATCAGAGTTTCCTAGAGAGAAGAATCGTGGAAGTTGTGAGGAAACAAAGAGTAACCATGGCAAGGATGCAGTGGAGGCTCTAGGGTATTCATCTGCAGATGCAGTTGAGATTAGTTTGGAGGAAGAAATACGAATTCTTGGTCATGAATATACCAACCTAGAAAATGAGCAGAGGAAGCTTGAACGTAATGCAGAATCTGTCAACAGTGAATTATTCACTGAATGTCAGGAACTATTGCAAATGTTTGGCTTGCCGTATATTATTGCTCCAATGGAAGCAGAAGCACAGTGTGCTTATTTGGAACTTGCAAAAATGGTTGATGGTGTTGTGACTGATGACTCTGATGTCTTTTTATTTGGGGCTCGTAGTGTCTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGATTGACCAGAGAAAAATTAATACGCATGGCACTGCTTCTGGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTCAATGCTATTGAGGTTGTAAACGCATTTCCTGAGGAAGATGGGCTTCTGAAATTCCGGCAGTGGGTTGAGTCACCAGATCCCACCATCTTGGGAATGTTTGATGCAAAAAGTGAATCCAGTACCAGAAAGAGAGGGTCAAAAGTTGAAGAAAAATTTACAAATTGCAGTATGGAAGAGGCTGTGCTAGATCAAAATATTTCCCATGTTCAGGAGCAAAAAGAATCATTAGACTACATCCAAGAAATAAAGCAAATTTTTATAAATAACCATAGAAATGTGAGCAAGAATTGGCATATTCCTTCATCTTTTCCAAGTGAAACAGTTATATCTGCTTATTCTTTTCCCCAAGTGGACAAATCAACTGATCCGTTCGCATGGGGAAAGCCTGATCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAGTTCGGGTGGACTAACCAGAAAGCAGATGAATTGCTATTGCCTGTTTTAAAGGAATATAACAAGAATGAGACTCAACTGCGGTTGGAAGCATTTTATACTTTTAATGAAAGATTTGCAAAAATTCGTAGCAAGAGAATTAAGAAAGCTGTGAAAGGAATCACTGGTAATCAGTCTTCTGAGTTGATAGATGAATCTTCAGAGGACTTGTCTAAGAACAGGAAGATTGGGAGAGGAAGTCCTGTTGAACTTGGGGATAACAGATCAGAGACTTTAAAGGGAACAGAGGAAAATCCTGCTGACATGAAGCGAATAAATTTAAAACAGACAATGAAAAGGAAGAATTCTGGAGATACTGTTGCTAAGGTGCAGTCAAGGAAAAAAAGAAACTTCAGCGATCCTGCTTCAGCTCCTGGTCCATCTGAAGTGGAGAATTTAGAACCCTATGTGCAGACAGGAGAAAAGTCAAGTGATGGTGATGCTTTAAATTGGAATAAAAGTGGAAGAGGCAAATGTAGAGGCAGAGGTGTGGGCCTTTGCAGAGGAAAGAGGAAGGGAAGTCTTGGTTTTGATACACGCAAAACGACATCTAGTGATAATGGCAGTGATGACCATGAGGAGAGAGTGAATGTTAAGAAGTCAAAAGAGCCGCAAGAGGTGCGAAGGTTTGATGTGGAATGCAAGCTAATCTTGCTTCTTGTTCCTGTGAATTTCTTCATGAAATGTCTCTGTGGCAAAGTGCCCCTGGGCAGGGAGGGGAAAATTACGCATTCTACACGTGCTCGGAAGATTATCAACTATGCCATCCAGGATCTTGAAATGGAAGACAGTGTTGATCCATTTGTTCAGAGCAATAAGACAGACTTGAATGAAGAGCCAATAGATGAAAGTTTATCTCGTATGCCTGATTCCTGTGCTGCCACTGATTTCAGCATAGATAAAGAAAGCATGGTAAATCTTTCTCTGAAGGAGGATTTGTCTAGAAACTATCTTGATTCAGGTGGTGGCTTTTGCGCTGACGAAGGTGAAACTAGTCATCCCGGAGCCACCAATTGCGATAGTTCTGTTCCTGCTGACTCTTTTAAAGATTACCATGAAGTGGGAGGAGGATTTTGTGTAGATGACGATGAGAGAGGTCACGACCATAATGAAATTCATAACGACACAACAGTTATAGTAGAGGATACTGCAGACCTTACACGTTGTGCTGGCTTTCTGGGTGAAGCTGACTATGATAAAAATTGTATGGATCAATCAAGTTCTGTTGATGGAAGAGCTGGAATCGAACTACGAGATGGAGTGACGGGTTGTACACACAAGATTGAGCTGAAACATGACCATGAAAATGCTAGAAGTAATCATGATCATTCTGAATCAGGGGTCTGGATATCAGAGAATGCTGATGGCAATAACGAAAACTACATGGCAGCATTTAGTGCCATGCCTTTTTTAAGAAAGAAGAGGAAGAAGAGCTAA 5307 0.4138 MGVQGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFMKAMRDEKGETIRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKTLKLRELANDIKNQRLKQDSDTKGEKKSDQIDLAGCAVVRRNEKELDKITGAKFAPEEDTNLSETMLSRSCNQKELDEMLAASIIAEEDGLLARKGVTSAAVHLSEEEGDADVEILLPEFNSEVDPSVLAALPQSMQLEILSQLKGKKTEGPLNELENQKLYEVNDKGKGKGIQLDEIGAVGCSSRSDDVITREHTQDKVDEMLAASIMAEENEKIVNNASTSGAFISEEEDDIYDEDEEMILPEMHGKVDPSILASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPTKFSELQIQAYLKTVAFRREINEVQKAAAGGGVAGVQTSRIASEANREYIFSTSFTGDKQELTSTKLEQNKATQPKSMGNHPSQGFVNNTEPANDSSTSRGFVRNEPGGDLDENIQTYLDERGQFRVSRLRAMGMRMTRDIQRNLDLMKEIEQERTDADKAANNNTFLNGEKICASKGSSNQVVGTSDKTNVDLAGENMRNEHSVLGDASIEISFVDDDENKCLDGDDDLFASLVAGNSGTNSCAENTLLKEQVSDSNSDCDWEEGIIEGQRNVFSGNVKGEMNPSVAKDNYSDESDVEWEEGVHDGSNSTLLRAAEPGKIASRGCLEEEADLQEAIRRSLENIGERELNCTSSIYEHSKTDEVKSDYASNHENLVGSGVKDFYEDSGVQNREVSMGASTLQREGGTEQNDSYYKIIDGNDKLDSVARNNLQTSQSRRGQSESFVAFNSEKMGTSVKKPCAVDMGSHSEDLLPNANERMKNDIHMVAEQFLGTLNEDGKGSTYCNKSFKVNSLGASEEDKNNYSNEGEPFNNSSKMSKPVAPFVDSSLEESTEDLDTQSEFPREKNRGSCEETKSNHGKDAVEALGYSSADAVEISLEEEIRILGHEYTNLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKMVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTILGMFDAKSESSTRKRGSKVEEKFTNCSMEEAVLDQNISHVQEQKESLDYIQEIKQIFINNHRNVSKNWHIPSSFPSETVISAYSFPQVDKSTDPFAWGKPDHLVLRKLCWEKFGWTNQKADELLLPVLKEYNKNETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGNQSSELIDESSEDLSKNRKIGRGSPVELGDNRSETLKGTEENPADMKRINLKQTMKRKNSGDTVAKVQSRKKRNFSDPASAPGPSEVENLEPYVQTGEKSSDGDALNWNKSGRGKCRGRGVGLCRGKRKGSLGFDTRKTTSSDNGSDDHEERVNVKKSKEPQEVRRFDVECKLILLLVPVNFFMKCLCGKVPLGREGKITHSTRARKIINYAIQDLEMEDSVDPFVQSNKTDLNEEPIDESLSRMPDSCAATDFSIDKESMVNLSLKEDLSRNYLDSGGGFCADEGETSHPGATNCDSSVPADSFKDYHEVGGGFCVDDDERGHDHNEIHNDTTVIVEDTADLTRCAGFLGEADYDKNCMDQSSSVDGRAGIELRDGVTGCTHKIELKHDHENARSNHDHSESGVWISENADGNNENYMAAFSAMPFLRKKRKKS 1768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1158 1768 Gene3D - 227 265 - -
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 1331 1445 - -
Glsi03g1158 1768 Coils Coil 548 568 - -
Glsi03g1158 1768 SMART xpgn3 1 98 IPR006085 GO:0004518
Glsi03g1158 1768 SMART xpgineu 1042 1111 IPR006086 GO:0004518
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 1465 1493 - -
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 919 944 - -
Glsi03g1158 1768 Coils Coil 998 1032 - -
Glsi03g1158 1768 FunFam DNA repair protein UVH3 991 1110 - -
Glsi03g1158 1768 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Glsi03g1158 1768 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Glsi03g1158 1768 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Glsi03g1158 1768 CDD PIN_XPG_RAD2 1028 1112 - -
Glsi03g1158 1768 Pfam XPG I-region 1045 1126 IPR006086 GO:0004518
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 472 517 - -
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 1342 1358 - -
Glsi03g1158 1768 CDD H3TH_XPG 1114 1256 - -
Glsi03g1158 1768 ProSitePatterns XPG protein signature 2. 1045 1059 IPR019974 GO:0016788
Glsi03g1158 1768 Gene3D - 1111 1225 - -
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 960 982 - -
Glsi03g1158 1768 SMART HhH_4 1113 1146 IPR008918 GO:0003677|GO:0003824
Glsi03g1158 1768 Gene3D - 966 1110 - -
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 472 507 - -
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 919 982 - -
Glsi03g1158 1768 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Glsi03g1158 1768 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Glsi03g1158 1768 CDD PIN_XPG_RAD2 2 92 - -
Glsi03g1158 1768 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 732 751 IPR003903 -
Glsi03g1158 1768 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 260 - -
Glsi03g1158 1768 Pfam Ubiquitin binding region 235 258 IPR025527 -
Glsi03g1158 1768 Pfam Ubiquitin binding region 365 389 IPR025527 -
Glsi03g1158 1768 FunFam DNA repair protein UVH3 1 146 - -
Glsi03g1158 1768 Gene3D - 1 145 - -
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 1474 1493 - -
Glsi03g1158 1768 FunFam DNA repair protein UVH3 1111 1168 - -
Glsi03g1158 1768 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Glsi03g1158 1768 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Glsi03g1158 1768 MobiDBLite consensus disorder prediction 1366 1385 - -
Glsi03g1158 1768 SUPERFAMILY PIN domain-like 2 1126 IPR029060 -
Glsi03g1158 1768 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1111 1318 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1158 Glsi-ChrGlsi03 72994872 73006106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1158 1036 1143 Core DNA Replication Machinery Family AT5G26680 36.036 1.49e-12 70.1