Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1154 ATGGCTTCTTGCCTTTATCCACCTATGGCTAGTAGTGGTCCAGAGATTGAGACCACAACGTTAGAGGTGGAAGCCTCAAGTGGTTTCAGAAAGAACATTAATGGAGGAGAAATTCACAGAGAAGAGGTGGGAATCTGTTTGACGTGGAAGGATCTGTGGGTGACTGGTTCTAGTGGGAAGAATGGAAGCAGAGCCATCCTCCAGGGTCTAACTGGTTATGCCAAGCCAGGGCAGCTTTTGGCCATAATGGGCCCTTCTGGGTGTGGCAAGTCTACACTTCTTGATGCATTAGCGGGGAGGTTAGGTTCAAACACAAGGCAAAGAGGGGAGATTCTGATCAATGGCCAAAAACAAGCACTGGCTTATGGATCCTCGGCCTATGTGACACAAGATGATACTTTATTGACGACCTTAACTGTAAGAGAAGCAGTGCACTATTCAGCTCAGCTCCAACTACCAAACATAATGTCAAAGGAAGAGAAGAAGGAGAGAGCAGATTTGACAATAAGAGAAATGGGTCTGCAAGATGCCATTAACACAAGAATTGGAGGGTGGGGATGCAAGGGCATAAGTGGGGGACAAAAGAGAAGAGTGAGCATTTGCATTGAGATCCTAACTCGCCCTAGACTTCTCTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCATACTATGTCATGAGCCAAATTGCAAGCCTTGATCAGAAGGATGATGGGATTCAGAGGACTATTATTGCTTCAATCCATCAACCTAGTAGTGAAGTTTTCCAACTTTTTCATAATCTTTGTCTTCTGTCTGTTGGTAGAACTGTGTACTTTGGCCCTGCTTCTGCTGCAAATGAGTTCTTTGCTTCAAATGGCTTTCCTTGTCCAGCTCTCCAGAACCCATCTGATCATTTCTTGAAAACAATCAACAAGGATTTTGATCAGGATAACAGCTCAATGGAGAAGAAGAAGAGAGGGCATGCGGGGTTCCCTACGCAGTGCCTTGTTCTTACAAAAAGATCATTTCTAAACATGTATCGAGACATAGGCTATTACTGGTTACGCCTTGTCATATACGCAGCTGTGGCTTTGTGTTTGGCCACTGAATTCTATGATCTTGGCACTAGTTCTCGGTCCATTCGGGTATTTCAACGAGAAAGGCTAAACGGGCATTATGGAGTGACTGCATTTGTGATAGGAAACAGCTTTTCTTCAATCCCATACTTATTACTATGTACCCTAATTCCTGGGGCCCTAGCCTATTACCTCCCAGGTCTTCAGAAAGGCCTAGACCACTTCCTCTACTTCTCTTCTGTTCTATTTTCCTGCCTAATGCTAGTGGAGAGTCTGATGATGATAGTAGCCAGCATCGTCCCAAACTTTCTGATGGGCATAATAACTGGAGCTGGAATCCAAGGCATCATGATCCTAGGAGGAGGCTTCTTTAGATTGCCTCACGATCTTCCCAGAATTTTCTGGAAATACCCTTTGCATTACGTTGCTTTTCATAGATATGCCTACCAAGGGTTGTTCAAGAACGAGTTTGAAGGTCTGAGTTTTGATAATGATCAAGTTAGCGGGGAAGAGGTTTTAAAAAGGGAATGGGAAGTCAATATGAGCTATTCAAAGTGGGTTGATCTTGGTGTCTTGCTGGGGATGATTGTTCTGTACAGAGTTTTGTTCTTGGTTATCATCAAGGCTAGGGAGAAGGTGAAGCCCATGATTGTTTCTTTTCTTTCAGGGCCTCCAAAAAGATCAATAGTGCAGGTCATGGTGAATCCCAATGCTACTCCGTTACATGGAGAGGCTGTATAA 1806 0.4413 MASCLYPPMASSGPEIETTTLEVEASSGFRKNINGGEIHREEVGICLTWKDLWVTGSSGKNGSRAILQGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSNTRQRGEILINGQKQALAYGSSAYVTQDDTLLTTLTVREAVHYSAQLQLPNIMSKEEKKERADLTIREMGLQDAINTRIGGWGCKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMSQIASLDQKDDGIQRTIIASIHQPSSEVFQLFHNLCLLSVGRTVYFGPASAANEFFASNGFPCPALQNPSDHFLKTINKDFDQDNSSMEKKKRGHAGFPTQCLVLTKRSFLNMYRDIGYYWLRLVIYAAVALCLATEFYDLGTSSRSIRVFQRERLNGHYGVTAFVIGNSFSSIPYLLLCTLIPGALAYYLPGLQKGLDHFLYFSSVLFSCLMLVESLMMIVASIVPNFLMGIITGAGIQGIMILGGGFFRLPHDLPRIFWKYPLHYVAFHRYAYQGLFKNEFEGLSFDNDQVSGEEVLKREWEVNMSYSKWVDLGVLLGMIVLYRVLFLVIIKAREKVKPMIVSFLSGPPKRSIVQVMVNPNATPLHGEAV 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1154 601 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524|GO:0016887
Glsi03g1154 601 Pfam ABC transporter 68 218 IPR003439 GO:0005524
Glsi03g1154 601 Gene3D - 47 325 IPR027417 -
Glsi03g1154 601 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 316 378 - -
Glsi03g1154 601 SMART AAA_5 76 266 IPR003593 GO:0016887
Glsi03g1154 601 Pfam ABC-2 type transporter 251 313 IPR043926 GO:0140359
Glsi03g1154 601 Pfam ABC-2 type transporter 375 512 IPR013525 GO:0016020|GO:0140359
Glsi03g1154 601 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 294 IPR003439 GO:0005524
Glsi03g1154 601 FunFam ABC transporter G family member 11 45 333 - -
Glsi03g1154 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 283 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1154 Glsi-ChrGlsi03 72904089 72909329 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1154 66 279 Calmodulin-binding Proteins AT2G36910 28.636 5.45e-10 60.8