Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1151 ATGGCTGGTAGTACTCTAGAGATTGAGACCACAACGTTAGAGGTGGAAGCCTTAAGTGGTTTCAGAAAGAACATTAATGGAGGAGAAACTCACAGAAAAGAGGTGGGTATCTGTTTGACATGGAAGGATCTGTGGGTGACTGGTTCTAGTGGGAAGAACGGAAGCAGAGCCATCCTTCAGGGTCTAACTGGTTATGCCAAGCCAGGGCAGCTCTTGGCCATAATGGGTCCTTCTGGTTGTGGCAAGTCTACACTTCTTGATGCATTAGCAGGGAGATTAGGTCCAAACACAAGGCAAACAGGGGAGATTCTGATCAATGGCTACAAACAAGCACTGGCTTATGGAACCTCGCAAGAAGATACTTTATTGACAACCTTAACTGTAAGAGAAGCAGTGCACTACTCAGCTCAGCTCCAACTACCTAACTCAATGTCAAAGGAAGAGAAGAAGGAGAGAGCAGATTTGACAATAAGAGAAATGGGTCTGCAAAATGCCATTAACACAAGAATTGGAGGGTGGGGTTGTAAGGGCATAAGTGGGGGCCAAAAGAAGAGAGTGAGCATTTGCATTGAGATCCTAACTCGCCCTAGACTTCTCTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCATACTATGTTATGAGCAAAATTGCAAGCCTTGATCAGAAGGATGATGGGATTCAGAGGACTATTATTGCTTCAATCCATCAGCCTAGTAGTGAAGTTTTCCAACTTTTTCATAATCTTTGTCTTCTGTCTTCTGGTAGAACTGTGTACTTTGGCCCTGCTTCTGCTGCAAGTGAGGTATTTCAACGTGAAAGGCTAAACGGGCATTATGGAGTGACTGCATTTGTGATAGGAAACAGCTTTTCTTCAATCCCATACTTATTACTATGTACCCTAATTCCTGGGGCCTTAGCCTATTACCTCCCAGGTCTTCACAAAGGCCTAGACCACTTCCTCTTCTTCTCTTCTGTTCTATTTTCCTGCCTAATGCTAGTGGAGAGTCTGATGATGATAGTAGCCAGCATCGTCCCAAACTTTCTGATGGGCATAATAACTGGAGCTGGAATCCAGGGCATCATGATCCTAGGAGGAGGCTTCTTTAGATTGCCTCACGATCTTCCCATAATTTTCTGGAAATACCCTTTGCACTACGTTGCTTTCCATAGATATGCCTATCAAGGATTGTTCAAGAACGAGTTTGAAGGTCTGGGTTTTGACGATGATCATGTTAGTGGGGAAGAGGTTTTGAGAAGGGAATGGGAAGTTGATATGAGCTATTCCAAGTGGGTTGATCTTGGTGTTTTGCTGGGGATGATTGTTCTGTGCAGAGTTTTGTTCTTGGTTATCATCAAGGCTAGTGAGAAGTTGAAGCCCATGGTTGCTTCTTTGCTTTCAGGCCTCCAGAAAGATCCATAG 1431 0.4416 MAGSTLEIETTTLEVEALSGFRKNINGGETHRKEVGICLTWKDLWVTGSSGKNGSRAILQGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGPNTRQTGEILINGYKQALAYGTSQEDTLLTTLTVREAVHYSAQLQLPNSMSKEEKKERADLTIREMGLQNAINTRIGGWGCKGISGGQKKRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMSKIASLDQKDDGIQRTIIASIHQPSSEVFQLFHNLCLLSSGRTVYFGPASAASEVFQRERLNGHYGVTAFVIGNSFSSIPYLLLCTLIPGALAYYLPGLHKGLDHFLFFSSVLFSCLMLVESLMMIVASIVPNFLMGIITGAGIQGIMILGGGFFRLPHDLPIIFWKYPLHYVAFHRYAYQGLFKNEFEGLGFDDDHVSGEEVLRREWEVDMSYSKWVDLGVLLGMIVLCRVLFLVIIKASEKLKPMVASLLSGLQKDP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1151 476 Pfam ABC-2 type transporter 270 405 IPR013525 GO:0016020|GO:0140359
Glsi03g1151 476 Pfam ABC transporter 60 206 IPR003439 GO:0005524
Glsi03g1151 476 Gene3D - 39 283 IPR027417 -
Glsi03g1151 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 269 IPR027417 -
Glsi03g1151 476 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 282 IPR003439 GO:0005524
Glsi03g1151 476 SMART AAA_5 68 254 IPR003593 GO:0016887
Glsi03g1151 476 ProSitePatterns ABC transporters family signature. 178 192 IPR017871 GO:0005524|GO:0016887
Glsi03g1151 476 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 32 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1151 Glsi-ChrGlsi03 72863534 72874353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1151 58 267 Calmodulin-binding Proteins AT2G36910 27.727 2.92e-11 64.3