Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1129 ATGAGGCTGAATCGCAGGAAGCTTCTAGAAGAAATCTGCACTCTGATCTGCCATGTCAAAGATAATTCTTGTTCTTCCATAGATTGCCACACTTGCGTCAAGCACTGCACGATCGATTCCCCGGTCTATTACTACCCTCCTCCAACTCCTCCGATCTACATCGATGTAGCTGATGATGATAATCCGAGCAAACCCCACAGGCTTTCCACCGTCTTGATCGTTACTATCTCTCTTCTCTCTGCCTCTTTCTTGGTTTTCTTCTGCTACGCCATATATGCCAAGTTTTTCAGGTCAAGAAGAAGGGGTTCGCAGGTACAAGAAACAGAGGATACCCATGCAGATTTTGTCGATGAAGAACAGGGCCCTTTTGTGGACCATCCGATTTGGTATATCCGAACCCCGGGTCTTCAACAATCCATCATCACTGCAATTACAGTTTGTAAGTATAAGAAAGGTGAGGGTTTGATCGAAGGAACAGAGTGCTCTGTTTGTTTGAGCGAGTTTGAAGAAGATGAGAATCTCAGACTGTTGCCTAAGTGTAATCACGCTTTTCATTTGCCTTGTATTGATACTTGGCTTCGATCTCACACCAGTTGCCCCATGTGCCGTGCTCCGATCGTGACGAACCCGGCAATGATAGCAACAACTCCGGAGGAATCTAACGTTGTTGATTCGAGTTCTGCAGAAAATACCCAGATCGAAACTGGTGAAAATAGCAGTGAAAGTGTAGAAAATAGAGTTCTTGAAGTGAGGAATGAAGAAGCAGAGGTCGAAGTAGTTGAAGATAGGACAAGGGTATGTGAAACTGAAAGCTCACTGGAAATTTTGCAGCCGAGAAGAAGATCAGTTTCTCTGGATTCTTCCTCTATTGCAGAGATCAATCTTGCTCTTGCTACCATAGCTCCATCAGTGGAATCTGCAAATGGGAGTTCAAAGAGGATTAAAGGGAGTTCTTCTTTCAGGGCAAGATCTCTGCTTCAGAGTGCACCTACTGCAATGAAGAGGTCACGCTCCTACAATGGAAAAAATCTACTATCTTGGTATAGTCGCAGTCAAATGAAGCCAAGTGTTCCTCTGAGAAGCTTTTGA 1089 0.4444 MRLNRRKLLEEICTLICHVKDNSCSSIDCHTCVKHCTIDSPVYYYPPPTPPIYIDVADDDNPSKPHRLSTVLIVTISLLSASFLVFFCYAIYAKFFRSRRRGSQVQETEDTHADFVDEEQGPFVDHPIWYIRTPGLQQSIITAITVCKYKKGEGLIEGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTSCPMCRAPIVTNPAMIATTPEESNVVDSSSAENTQIETGENSSESVENRVLEVRNEEAEVEVVEDRTRVCETESSLEILQPRRRSVSLDSSSIAEINLALATIAPSVESANGSSKRIKGSSSFRARSLLQSAPTAMKRSRSYNGKNLLSWYSRSQMKPSVPLRSF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1129 362 FunFam RING-H2 finger protein ATL54 136 209 - -
Glsi03g1129 362 MobiDBLite consensus disorder prediction 218 244 - -
Glsi03g1129 362 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 60 225 IPR044675 -
Glsi03g1129 362 MobiDBLite consensus disorder prediction 218 243 - -
Glsi03g1129 362 SUPERFAMILY RING/U-box 155 209 - -
Glsi03g1129 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 210 IPR013083 -
Glsi03g1129 362 Pfam Ring finger domain 160 203 IPR001841 -
Glsi03g1129 362 SMART ring_2 161 202 IPR001841 -
Glsi03g1129 362 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Glsi03g1129 362 CDD RING-H2_EL5-like 160 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1129 Glsi-ChrGlsi03 72408847 72409935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1129 70 247 C3H Transcription Factor Family AT1G72220 49.223 3.06e-49 169