Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi03g1112 | ATGGACAGTAGCAGCAGCAGAGCCGAAGCTGAGCGGTGGCTCTACACAGCCAATAAGCTCCTCAGCGCACGTGATCTGCACGGGGCCAGGTCCTTCGCTGTCCGAGCCCGTGAGTCCGATCCCACATTTGACGCCTCCGAGCTCCTCCTCACCGTCATCGACACCCTCCTCGCCGGCGAGAATCGGATCAACAGTCTCCATGACTGGTACGGCATCCTTCAAATCCTTCCCTACACCCATAACATCGAGTGCGTCGCCGCGCAGTACCGCCGTCTTGCCGTCCTCCTCGACCCTCATCGGAACCCTTTTGCGTTTTCCGGAAACGCCTTCACTCTCGTCCATGATGCCTGGTCGGTGTTGTCGAATCCCGTCAAGAAGGCTATGTACGACAATGAGTTGAGATTGGTCACCGGCCCCCCTACTGCTCCACCTCCGGCCCCCATTCCCGTCGCTCCGACACCGAGTATGACTCCACCTCCGGTGCAGAGGCAACAACAGCAGCAGCAGATTTCACAAAGGAAAAGCAGCAGGTCGAAGGACGGAAGGGCGGTTGCTGAGGAAGTAAGGCCAAGCCCTAACATTGAGGCCGAGTCAACTCGGCAAGCTCAGACGAGTGAATCTACAAGGCCGGCTGAGACTGAGGTGGGTTCGAGTTTCTGGACGGCGTGCCCGTACTGTTACGTTATGTACGAGTACCCGAGAGCTTACGAGGACTGTACCCTTAGGTGCCAGAGCTGTCGGAGGGGGTTCCATGCGCTTAAGGTACGGACACCGCCTGTGGCGGAGAAAGATTCGTATTATTGCTGTTGGGGGTTTTTCCCATTAGGGTTTTCAGGCAATTTCAAAGATATAAGTGGGACTTCTTCCAAGTGGAACCCATTTTCTGCCATGTTTGCTTGCCCTTTGAAGGGAACGTCCAACCGGAGATCTCAAAAAGGGCCTTGGATTTATTACGATGATGAAGCTGCTGCTGCATTTGTGGAACTTTCTGATGCAAGTAAGGAGGATTCTGATGATGATGACTGGCGGGGTAATATTAAGAGGGAAAGGAAGAGGGCAAAGAAGGCAAAGGGGAAAGGTTTTACTGCTGCTAGTGGTAACAATAAAAGAGCACCTATAGAAAGAGCTAGGAGAGGGAATCATAGTGGTTCAGAGCATGGAAATTACGAAAATGGAGGGGTTGGAGATGATGGTGCTGGTGTGCCAAAAGCTCCAAGAACAGAATCTAGTAAAAAAGCTGCATTGACTAGCTCGAGGAGGAGGGGTGCGGAAAACTTGGAGAAATTGGATTTGAATGTGGAGTTTAGTAATGAGGTGGAAGATCCTACCCCAGCAGCGAGAGAAGGGAATGTGGCTGGAAATGCTGAGGAAGAAGGGATGTTTTTCGAGGGTCTTGATGAGTTCCTTAGTAGCTTACCCATTCTCAATGTTGTTGCAGATGACAAGGTTAAGGGTCACTAG | 1461 | 0.5209 | MDSSSSRAEAERWLYTANKLLSARDLHGARSFAVRARESDPTFDASELLLTVIDTLLAGENRINSLHDWYGILQILPYTHNIECVAAQYRRLAVLLDPHRNPFAFSGNAFTLVHDAWSVLSNPVKKAMYDNELRLVTGPPTAPPPAPIPVAPTPSMTPPPVQRQQQQQQISQRKSSRSKDGRAVAEEVRPSPNIEAESTRQAQTSESTRPAETEVGSSFWTACPYCYVMYEYPRAYEDCTLRCQSCRRGFHALKVRTPPVAEKDSYYCCWGFFPLGFSGNFKDISGTSSKWNPFSAMFACPLKGTSNRRSQKGPWIYYDDEAAAAFVELSDASKEDSDDDDWRGNIKRERKRAKKAKGKGFTAASGNNKRAPIERARRGNHSGSEHGNYENGGVGDDGAGVPKAPRTESSKKAALTSSRRRGAENLEKLDLNVEFSNEVEDPTPAAREGNVAGNAEEEGMFFEGLDEFLSSLPILNVVADDKVKGH | 486 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi03g1112 | 486 | MobiDBLite | consensus disorder prediction | 194 | 213 | - | - | |
| Glsi03g1112 | 486 | Pfam | DnaJ domain | 68 | 130 | IPR001623 | - | |
| Glsi03g1112 | 486 | ProSitePatterns | Nt-dnaJ domain signature. | 110 | 129 | IPR018253 | - | |
| Glsi03g1112 | 486 | MobiDBLite | consensus disorder prediction | 138 | 159 | - | - | |
| Glsi03g1112 | 486 | SMART | dnaj_3 | 67 | 125 | IPR001623 | - | |
| Glsi03g1112 | 486 | ProSiteProfiles | dnaJ domain profile. | 68 | 133 | IPR001623 | - | |
| Glsi03g1112 | 486 | SUPERFAMILY | Chaperone J-domain | 63 | 134 | IPR036869 | - | |
| Glsi03g1112 | 486 | PANTHER | CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN | 1 | 367 | - | - | |
| Glsi03g1112 | 486 | Gene3D | DnaJ domain | 64 | 137 | IPR036869 | - | |
| Glsi03g1112 | 486 | MobiDBLite | consensus disorder prediction | 413 | 429 | - | - | |
| Glsi03g1112 | 486 | MobiDBLite | consensus disorder prediction | 160 | 174 | - | - | |
| Glsi03g1112 | 486 | CDD | DnaJ | 68 | 122 | IPR001623 | - | |
| Glsi03g1112 | 486 | CDD | PHD_SF | 223 | 268 | - | - | |
| Glsi03g1112 | 486 | MobiDBLite | consensus disorder prediction | 135 | 213 | - | - | |
| Glsi03g1112 | 486 | MobiDBLite | consensus disorder prediction | 334 | 429 | - | - | |
| Glsi03g1112 | 486 | MobiDBLite | consensus disorder prediction | 434 | 453 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi03g1112 | Glsi-ChrGlsi03 | 72170748 | 72172208 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi03g1112 | 9 | 485 | SUVH1 or 3-interacting DNAJ domain-containing protein superfamily | AT5G64360 | 40.241 | 1.74e-100 | 308 |