Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1076 ATGTCCTATCCTATCCTTTTCCCCTTTGTGGATTCCAGATGAGGGATGACGAGACAGAAAATAGAGATAAAGAAGATAGAAAGCATAACAGCGAGGCAGGTGACTTTCTCAAAGAGAAGGAGAGGGCTTTTCAAGAAGGCTCAGGAGCTTTCTACTATGTGTGATGCTGAGATAGCTCTTATAGTCTTTTCTTCCACTGGCAAGCTCTATGACTACGCTAGCTCAAGTGACCTGATACAGTTGCAATACTCTTCGGATCAGTCACAACAATATGCTATTTTAGAACCTTCACATATTGGGAGTGACACCTACAATATGCTTCGCAATGAAGTTGCAAATAAGACTCATGAACTGAGGCAGTTGAATGGGGAAGAGCTGCAAGAATTGACACTACAAGAATTACAGAAACTTGAGGAACTACTTGAAATGAGCCAGATCCGTGTTTCAAAAGCAAAGGGTAAAAGATTTGTATCAGAGATCTGCGAACTCAAGAGGAAGTTGTTTGGTTGGGAACTAGAGACTTTGAACCGTGTTGCTAAGTTGGAAATTTCTAGCAGGTAA 561 0.4135 MSYPILFPFVDSRXGMTRQKIEIKKIESITARQVTFSKRRRGLFKKAQELSTMCDAEIALIVFSSTGKLYDYASSSDLIQLQYSSDQSQQYAILEPSHIGSDTYNMLRNEVANKTHELRQLNGEELQELTLQELQKLEELLEMSQIRVSKAKGKRFVSEICELKRKLFGWELETLNRVAKLEISSR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1076 186 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Glsi03g1076 186 SUPERFAMILY SRF-like 17 81 IPR036879 GO:0003677|GO:0046983
Glsi03g1076 186 ProSiteProfiles K-box domain profile. 97 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi03g1076 186 Pfam K-box region 103 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi03g1076 186 Coils Coil 104 124 - -
Glsi03g1076 186 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Glsi03g1076 186 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Glsi03g1076 186 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Glsi03g1076 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Glsi03g1076 186 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Glsi03g1076 186 Coils Coil 134 154 - -
Glsi03g1076 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 150 - -
Glsi03g1076 186 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Glsi03g1076 186 CDD MADS_MEF2_like 18 76 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1076 Glsi-ChrGlsi03 71084336 71095157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1076 16 166 MADS-box Gene Family AT2G22540 50.641 4.39e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi03g1076 K-box 3.9e-11 No_clan