Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1072 ATGGCTTGGTTATCTGTGCATGAGAACGTTGGGGAGGGTGTGGACTTTTGTTGGCGTCTTGATGGCTTTTTCTCATTGGACTATATGGAGGATGTAAAGGCTTTGGGAGGGGTTGAATCTTGCAAAGTCTATGGGGAAATGACGAGACAGAAGATAGAAATCAAGAAGATCGACAACAAAACAGCGAGGCAGGTGACATTTTCTAAGAGGAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGCTTTCAACTCTCTGTGATGCTGAGATAGCTCTCATAGTCTTTTCTGCTACTGGCAAACTATATGAGTATGCTAGCCCAAGGTCTCTCTCTCTTCCCTTTTTTATCTCTTGA 351 0.4387 MAWLSVHENVGEGVDFCWRLDGFFSLDYMEDVKALGGVESCKVYGEMTRQKIEIKKIDNKTARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATGKLYEYASPRSLSLPFFIS 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1072 116 ProSiteProfiles MADS-box domain profile. 47 107 IPR002100 GO:0003677|GO:0046983
Glsi03g1072 116 CDD MADS_MEF2_like 49 106 IPR033896 GO:0000977|GO:0045944
Glsi03g1072 116 SMART madsneu2 47 106 IPR002100 GO:0003677|GO:0046983
Glsi03g1072 116 ProSitePatterns MADS-box domain signature. 49 103 IPR002100 GO:0003677|GO:0046983
Glsi03g1072 116 PRINTS MADS domain signature 49 69 IPR002100 GO:0003677|GO:0046983
Glsi03g1072 116 PRINTS MADS domain signature 69 84 IPR002100 GO:0003677|GO:0046983
Glsi03g1072 116 PRINTS MADS domain signature 84 105 IPR002100 GO:0003677|GO:0046983
Glsi03g1072 116 SUPERFAMILY SRF-like 47 107 IPR036879 GO:0003677|GO:0046983
Glsi03g1072 116 Gene3D - 59 111 IPR036879 GO:0003677|GO:0046983
Glsi03g1072 116 PANTHER SERUM RESPONSE FACTOR HOMOLOG 47 107 - -
Glsi03g1072 116 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 56 103 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1072 Glsi-ChrGlsi03 70847624 70851322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1072 47 107 MADS-box Gene Family AT4G24540 75.410 6.68e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi03g1072 SRF-TF 3.5e-27 No_clan