LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g1071	ATGACGAGGAGGAAGATACAGATAAAGAAAATAGACAGCATAACAGCAAGGCAGGTGACTTTCTCAAAGAGGAGGAAAGGTCTTTTCAAGAAGGCCCAGGAACTGTCAACTCTCTGTGACGCTGAGATTGCTCTCATAGCCTTCTCTGCCACTGGCAAGCTCTTTGATTATGCTAGCTCGAGGTATATATCATCTAGCATTTGCATACTCCTAGATCTTGAAGGTGATTCCTGTGACAAGCTGCACAAGATATTAGTAGAAAAGACTCATGAGTTGAGGCAGTTGAGTGGGGAAGAGCTTCAGGGATCTACATTACAAGAATTACGGAAACTGGAGGAACTAGTTGAGAGAAGCTTGACCCGAGTTTCTAAAACTATGCTCAGTGGTTGCCCTGTGCAAGTCTTAGCTCTTGAATTGGACCTGATAGGACCATTTCATAAGGAGGCTGGTTTACACTATGCAGTCGGACTGGTGATTGGGTCGGTTCACTGA	492	0.4472	MTRRKIQIKKIDSITARQVTFSKRRKGLFKKAQELSTLCDAEIALIAFSATGKLFDYASSRYISSSICILLDLEGDSCDKLHKILVEKTHELRQLSGEELQGSTLQELRKLEELVERSLTRVSKTMLSGCPVQVLALELDLIGPFHKEAGLHYAVGLVIGSVH	163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g1071	163	Gene3D	-	14	69	IPR036879	GO:0003677\|GO:0046983
	Glsi03g1071	163	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Glsi03g1071	163	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Glsi03g1071	163	CDD	MADS_MEF2_like	3	60	IPR033896	GO:0000977\|GO:0045944
	Glsi03g1071	163	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Glsi03g1071	163	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Glsi03g1071	163	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Glsi03g1071	163	SUPERFAMILY	SRF-like	2	61	IPR036879	GO:0003677\|GO:0046983
	Glsi03g1071	163	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Glsi03g1071	163	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	125	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g1071	Glsi-ChrGlsi03	70825782	70830835	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g1071	1	138	MADS-box Gene Family	AT4G24540	50.649	1.06e-40	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Glsi03g1071		SRF-TF	7.8e-24	No_clan