Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1059 ATGGGAAAACTTCATTTCTCTGCTTTCATGCTTTCACTGCATTGCTTCATGGCCTACTTAGCTTTGAGTAAGCCAAATATCACCACAGATAAGTCTGCACTTCTTTCTTTCAAATCTTCTATCTTGGATCCTTACAATCTCTTGGCTAATTGGTCTAACTCTTCTTCTCTATGCAATTGGGTTGGTGTCACTTGCAATACCCGCCATGGAAGGGTTCAAGCCTTGAATCTTGGAAACATGGGTCTCGAGGGCACCATACCTTCACAACTAGGAAATCTCTCATTCCTGGTTGAACTCGATCTTCATAACAACAATTTTCATGGTCACTTCCCAAAAGAGTTAGTTCAATTGGGTAGATTGAAACTGATTAACTTAAGCTACAATGAATTTGATGGAGAAATTCCTACATGGATAGGGGGCTTGTCTATGCTTCAACACTTGTGTCTCCACAATAATAGTTTAAGTGGAATCATCCCATTAACCATATCTAACCTGTCAAGGTTGGAGACCTTGGATTGGACTTATAATTTTATTGAGGGAACCATTCCACTGGAGATTGGAAGACTTGAGCACTTGAATATTTTACGAATGGGAGCTAACAAACTTTCAGGAGTCATACCTCAAACCATTTCCAACTTATCTTCACTTGAATTGTTGACTTTGGGTTATAACACTTTATCAGGAGGCATTCCAAAAGAGATTGGTGATCTTTCACAACTAATGATACTGCATCTTTCAAATAATCAGCTTTTTGGCTCTGTACCCTCAACAATATTTGAAAGTTCACTGCTACAAGAGATTGACCTTAGTTATAATAATTTGTCTGGAAGTTTTCCGTTAAATTTATGTCATGGGCTTCCAAAACTTGAATTACTTTATCTAGATTTCAATGACTTCTCTGGGGAGATGCCATCTGTTTGGTGTCAATGCAAAGAATTGAAAAACTTAGCATTATCCAATAATGGATTCAACAAAGGATACATACCAAGTGACCTTGGAAATCTGACCAACCTTCAAGTCTTATATCTTGATAACAACAATTTGGAAGGTGAAGTCCCATCATCTCTCTTTAACATTTCTTCTTTGAGAATGATCATTCTAGAGGGAAACCATTTACAAGATTTCTTGCAAAGAGTGAACATAATGATTGATGTGGCGTCTGCATTGGAGTATCTTCATCATGGTTCTTCAACACCTGTGGTTCATTGTGATGTGAAGCCCAGTAATGTTTTATTAGATGAAGATATGGTGGCTCATCTTTCTAATTTTGGTATTGCCAAACTATTGTGTGAAGGGCAATTTGAAATTTATACAAAGACCTTGGCAACTCTTGGCTACATTGCCCCAGAGTATGGATCTAAAGGAATTGTTTCCATGAAAGGAGATGTGTACAGCTATGGTATTTTACTAATGGAAGTGTTTACAAGGAAAAAGCCAACAGATGACATTCATATGCCCGTCACAGTATCCTAG 1473 0.3768 MGKLHFSAFMLSLHCFMAYLALSKPNITTDKSALLSFKSSILDPYNLLANWSNSSSLCNWVGVTCNTRHGRVQALNLGNMGLEGTIPSQLGNLSFLVELDLHNNNFHGHFPKELVQLGRLKLINLSYNEFDGEIPTWIGGLSMLQHLCLHNNSLSGIIPLTISNLSRLETLDWTYNFIEGTIPLEIGRLEHLNILRMGANKLSGVIPQTISNLSSLELLTLGYNTLSGGIPKEIGDLSQLMILHLSNNQLFGSVPSTIFESSLLQEIDLSYNNLSGSFPLNLCHGLPKLELLYLDFNDFSGEMPSVWCQCKELKNLALSNNGFNKGYIPSDLGNLTNLQVLYLDNNNLEGEVPSSLFNISSLRMIILEGNHLQDFLQRVNIMIDVASALEYLHHGSSTPVVHCDVKPSNVLLDEDMVAHLSNFGIAKLLCEGQFEIYTKTLATLGYIAPEYGSKGIVSMKGDVYSYGILLMEVFTRKKPTDDIHMPVTVS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1059 490 SMART LRR_typ_2 189 212 IPR003591 -
Glsi03g1059 490 SMART LRR_typ_2 93 117 IPR003591 -
Glsi03g1059 490 SMART LRR_typ_2 141 164 IPR003591 -
Glsi03g1059 490 SMART LRR_typ_2 286 310 IPR003591 -
Glsi03g1059 490 SMART LRR_typ_2 237 261 IPR003591 -
Glsi03g1059 490 SMART LRR_typ_2 335 359 IPR003591 -
Glsi03g1059 490 SUPERFAMILY L domain-like 51 394 - -
Glsi03g1059 490 Gene3D Ribonuclease Inhibitor 27 180 IPR032675 -
Glsi03g1059 490 FunFam Piriformospora indica-insensitive protein 2 185 279 - -
Glsi03g1059 490 Gene3D Transferase(Phosphotransferase) domain 1 382 489 - -
Glsi03g1059 490 ProSiteProfiles Protein kinase domain profile. 240 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1059 490 SUPERFAMILY Protein kinase-like (PK-like) 360 485 IPR011009 -
Glsi03g1059 490 SMART serkin_6 293 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1059 490 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 280 376 - -
Glsi03g1059 490 Pfam Leucine rich repeat 238 299 IPR001611 GO:0005515
Glsi03g1059 490 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 184 - -
Glsi03g1059 490 Gene3D Ribonuclease Inhibitor 283 381 IPR032675 -
Glsi03g1059 490 Gene3D Ribonuclease Inhibitor 181 282 IPR032675 -
Glsi03g1059 490 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 376 482 IPR046959 -
Glsi03g1059 490 Pfam Leucine Rich Repeat 144 165 IPR001611 GO:0005515
Glsi03g1059 490 Pfam Leucine Rich Repeat 337 356 IPR001611 GO:0005515
Glsi03g1059 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Glsi03g1059 490 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Glsi03g1059 490 Pfam Protein kinase domain 377 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1059 Glsi-ChrGlsi03 70559177 70574937 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1059 375 483 Receptor kinase-like Gene Family AT3G47570 53.043 7.38e-32 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi03g1059 Pkinase 3.6e-22 CL0016