Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1058 ATGTGCCATCATCTTCCTTCACTTAAAATTTTCACCGTTGTTGGTAATAAATTTAAAGGAAGCATTCCAAAATCAATTAGTAACTGCACATCTTTGAAAGGATTATATTTGGATATCAACTCATTTACAGGTCTTATACCGAAGGAGATAGGCAATTTAGATAAAATTGAAATACTAGACCTGAGTCATAACTATTTGAGTGGACCTATTCCTTCAAATATTTTCAATATTTCAACATTGACGTCATTGGCTCTTCAACATAATTCGTTGTCTGGCCTTCTTTCCCCAAATTTCGGATGTGGCCTTCCCAATCTACAGAAACTTTGGCTACAGGGAAATGAACTTGCTGGACAAATTCCAAAGAGTATATCAAATGCTTCTGAACTTGTTACCCTACGGCTAGATCTGAATAAATTTAGCGGGGTTATACCCAATACAATTGGGAATTTGGCCAACTTGTATGAATTAAATTTAGAAGGGAATGATTTGAATGGATCCATTCCTATTACAATTACAAAATTAGAAGGGCTTCAATATTTGAACCTTGGTAACAACAAATTGCAAGGATCCATCACAAATGCAATTTGCCAGAGCAAAAATTTGGCTGAGTTGCATCTAGCCAATAACGAGTTTTCTGGATTGGTGCCAATATGCCTTGGAAGTCTCACTTTTCTACAAAAGCTTGACTTGAGCTCTAACAAGTTGATTTCACAAGTACCCTATTCTCTTTGGAGTCTTAGAGATATCTTGGTGGTAAACTTATCCTCAAACGCATTGAGTGGATTTCTTCCACTTGAGATTTCAAACTTAAGAGCAATCGAACTATTGGACTTGTCAAGAAATCAAATTTTAGGAAATATTCCTACAACTATTGGTGGCTTGCAAACTTTGCAAAATCTATCTCTAGCACAAAACAAATTACATGGACCTATTCCCGATTCACTTGGCAGTATGGTAAATGTAGAGTCCTTGGACTTTTCTCAAAATTATTTGTCTGGTGTGATTCCAAAATCCTTAGAGTCACTTGTCCATCTTAAATTCCTTAATCTTTCTTACAATTTCTTGCATGGAGAGATTCCAAATGGTGGGCCCATTGCAAATTTTACTGCTGAATCTTTTATGATGAATAAAGATCTTTGTGGTAAACCACAACTACAAGTCAAACCATGTAGAAAGAAAAACAAGCATAGGTCAACTAAAGAGATGCTTTTGATCAAATGCTTATTGCCCATCTTGTTGGCAACCATTTTGGTTGTTTCATGCTTAGTCTTTCTAAAATGTAAGAGAGATCATGTTGGTGATTCAAGTAATAAAGATTTAGTAAATTTGGAAATGCCAACCAGGATATCCTATTATGAAATTCTAAAAGGAACAAATGGATTCGATGAGACAAATTTTCTTGGCAGGGGAAGTTTTGGATCAGTATTCAAAGGAGTGCTTTCAAATGGAAAGATAGTTGCAATTAAAATTTTTAATTTAGATTTCGAAAAAGCAGCAAGGAGTTTCAATATAGAATGTGCAGCTTTGTGCAACTTGCGTCATCGAAATCTTATTAAGATCATTAATAGTTGCTCAAATCTTGATTTTAAATCTTTAATAATGGAATTTATGCCAAATGGGAGTCTTGAAAGATGGTTGTATTCTCATAACTATTGCTTAGATTTTTGGCAAAGAGTGAACATAATGATTGATGTGGCCTCTGCATTGGAGTATCTTCATCATGGTTCTTCAACACCCGTGGTTCATTGTGATGTGAAGCCGAGTAATGTTTTATTGGATGAAGATATGGTGGCCCATCTTACTGATTTTGGTATTGCCAAACTATTGGGTGAAGGGCAATTTGAAGTTCATACCAAGACTTTGGCAACTCTTGGCTACATTGCACCAGAGTATGGATCTAAAGGAATTGTTTCCACGAAAGGAGATGTGTACAGCTATGGTATTTTGTTAATGGAAATTTTTACAAGGAAAAAGCCAACAGATGAAATGTTTGTTGAAGGATTAAGTTTGAAATATTGGATTAGCCAGTCAATACCACATTCATTAGTTCATATTATAGATTCCAATTTGTTTCAAGGATACAATCAAAATATTGGTGATATATTACCACTTATATCATCAATTTTGGAATTAGCGTTGAATTGTTGCACTGAATTACCTGAAACACGAATGAATATGACAGATATTGTGGTGTCATTGAACAAAATTAAGGCCATGTTTATGCAAAATGAGAGGCGCACCACAACTTTGAATAACCATTACATTGACAAGTAA 2274 0.3483 MCHHLPSLKIFTVVGNKFKGSIPKSISNCTSLKGLYLDINSFTGLIPKEIGNLDKIEILDLSHNYLSGPIPSNIFNISTLTSLALQHNSLSGLLSPNFGCGLPNLQKLWLQGNELAGQIPKSISNASELVTLRLDLNKFSGVIPNTIGNLANLYELNLEGNDLNGSIPITITKLEGLQYLNLGNNKLQGSITNAICQSKNLAELHLANNEFSGLVPICLGSLTFLQKLDLSSNKLISQVPYSLWSLRDILVVNLSSNALSGFLPLEISNLRAIELLDLSRNQILGNIPTTIGGLQTLQNLSLAQNKLHGPIPDSLGSMVNVESLDFSQNYLSGVIPKSLESLVHLKFLNLSYNFLHGEIPNGGPIANFTAESFMMNKDLCGKPQLQVKPCRKKNKHRSTKEMLLIKCLLPILLATILVVSCLVFLKCKRDHVGDSSNKDLVNLEMPTRISYYEILKGTNGFDETNFLGRGSFGSVFKGVLSNGKIVAIKIFNLDFEKAARSFNIECAALCNLRHRNLIKIINSCSNLDFKSLIMEFMPNGSLERWLYSHNYCLDFWQRVNIMIDVASALEYLHHGSSTPVVHCDVKPSNVLLDEDMVAHLTDFGIAKLLGEGQFEVHTKTLATLGYIAPEYGSKGIVSTKGDVYSYGILLMEIFTRKKPTDEMFVEGLSLKYWISQSIPHSLVHIIDSNLFQGYNQNIGDILPLISSILELALNCCTELPETRMNMTDIVVSLNKIKAMFMQNERRTTTLNNHYIDK 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1058 757 SMART LRR_typ_2 174 198 IPR003591 -
Glsi03g1058 757 SMART LRR_typ_2 270 294 IPR003591 -
Glsi03g1058 757 SMART LRR_typ_2 102 126 IPR003591 -
Glsi03g1058 757 SMART LRR_typ_2 318 341 IPR003591 -
Glsi03g1058 757 SMART LRR_typ_2 222 246 IPR003591 -
Glsi03g1058 757 SMART LRR_typ_2 53 77 IPR003591 -
Glsi03g1058 757 SMART LRR_typ_2 342 366 IPR003591 -
Glsi03g1058 757 ProSitePatterns Protein kinases ATP-binding region signature. 467 489 IPR017441 GO:0005524
Glsi03g1058 757 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 99 394 - -
Glsi03g1058 757 Gene3D Transferase(Phosphotransferase) domain 1 537 755 - -
Glsi03g1058 757 SMART LRR_sd22_2 270 296 - -
Glsi03g1058 757 SMART LRR_sd22_2 318 344 - -
Glsi03g1058 757 SMART LRR_sd22_2 222 238 - -
Glsi03g1058 757 SMART LRR_sd22_2 102 128 - -
Glsi03g1058 757 SMART LRR_sd22_2 53 79 - -
Glsi03g1058 757 SUPERFAMILY Protein kinase-like (PK-like) 442 733 IPR011009 -
Glsi03g1058 757 Gene3D Phosphorylase Kinase; domain 1 426 536 - -
Glsi03g1058 757 FunFam Serine-threonine protein kinase plant-type 441 536 - -
Glsi03g1058 757 SMART serkin_6 461 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1058 757 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 537 746 - -
Glsi03g1058 757 Pfam Leucine rich repeat 296 353 IPR001611 GO:0005515
Glsi03g1058 757 Pfam Leucine rich repeat 6 66 IPR001611 GO:0005515
Glsi03g1058 757 Pfam Leucine rich repeat 128 187 IPR001611 GO:0005515
Glsi03g1058 757 Pfam Protein kinase domain 463 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1058 757 ProSiteProfiles Protein kinase domain profile. 461 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1058 757 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 2 94 - -
Glsi03g1058 757 Gene3D Ribonuclease Inhibitor 98 399 IPR032675 -
Glsi03g1058 757 SUPERFAMILY RNI-like 15 361 - -
Glsi03g1058 757 Gene3D Ribonuclease Inhibitor 2 97 IPR032675 -
Glsi03g1058 757 PANTHER OS04G0122200 PROTEIN 133 740 - -
Glsi03g1058 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1058 Glsi-ChrGlsi03 70433289 70440007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1058 16 747 Receptor kinase-like Gene Family AT3G47570 35.819 2.38e-150 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi03g1058 Pkinase 5.6e-45 CL0016