Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1012 ATGGGTTCGGTGAATCCACAGCCACTGCAAGCACGGCCCTTTGAGGAACAAGGACAACAACTCGGCCAGATATCCATGCAGGTGGATCGGGTCGACGGTGGATTTAATGCCGAGTGTGTTAATGGACGTCGTGACGAGGTCACTGATGCGGTGGAAGAAGCTCGAGTGAGTTCTGGGTTATCTGGGAGTAGTGCTTGTGCTTTGCAGTCACGAACCAGTGAGCTCACTATTGCGTTTGAAGGCGAGGTCTACGTTTTCCCAGCGGTTACCCCAGAAAAGGTACAGGCTGTTCTGTTACTGTTGGGAGGGCGTGAGATACTCAGCCCCAGTAGCATTCCCAGCACTGAGTTTTTGCTGCAACAGAATTGTCAGAACATGAGGGGAATTAATGATTCTTCCCGAGGTTCAAAGCTTTCACGGAGGTTTGCATCCCTTGTTAGGTTTCGTGAAAAGCGGAAAGAGAGATGTTTTGAGAAGAAAATTCGATACACCTGCCGTAAAGAGATTGCTCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCGTTGAAGGAATGCTACAGTTCTGCTGCTGAAAACTGGGATTCAGGCAATGGTGCTCGTTGTTCAGAATCTATTGAACGTAGATGCCAGCATTGTGGGATTAGTGAAAAGTCTACTCCAGCTATGCGCCGAGGACCAGCTGGTCCAAGATCTCTGTGTAACGCCTGTGGACTTATGTGGGCAAATAAGGGAACTCTCAGAGATCTCAGCAAAGCAGGAAGGATTAGTTCTTTTGGACAAAATGAACTGGATACTTCAGCTGATGTAAAGCCTTCAACAACTGAACCGGAAAATTCTTGTCCTGACCAAAATCAGGGAAGCCCAGAGGAGACTAAGCCGGTGCCATTAAACTCCAGATATTCACCCAAGAAGACGAATGAGCAGTATATGCTTGAAACTGCTGAAGCAATTACGGACAACTTGTCCATCCAAGTGGAGAATCCTGCTGTTAATCTGCAAGAGCAGGATACTCTTGAAGATCTTGCGGATGCATCTGGATCGGAATTTGAGATTCCTGCAGGTTTTGATGAGCAGGTTGACATTGATGACTCCAACATGAAGACTTACTGGTTATGA 1119 0.471 MGSVNPQPLQARPFEEQGQQLGQISMQVDRVDGGFNAECVNGRRDEVTDAVEEARVSSGLSGSSACALQSRTSELTIAFEGEVYVFPAVTPEKVQAVLLLLGGREILSPSSIPSTEFLLQQNCQNMRGINDSSRGSKLSRRFASLVRFREKRKERCFEKKIRYTCRKEIAQRMHRKNGQFASLKECYSSAAENWDSGNGARCSESIERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRISSFGQNELDTSADVKPSTTEPENSCPDQNQGSPEETKPVPLNSRYSPKKTNEQYMLETAEAITDNLSIQVENPAVNLQEQDTLEDLADASGSEFEIPAGFDEQVDIDDSNMKTYWL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1012 372 Pfam tify domain 70 102 IPR010399 -
Glsi03g1012 372 Pfam GATA zinc finger 210 246 IPR000679 GO:0006355|GO:0043565
Glsi03g1012 372 Gene3D - 205 255 IPR013088 GO:0006355|GO:0008270
Glsi03g1012 372 MobiDBLite consensus disorder prediction 258 304 - -
Glsi03g1012 372 ProSiteProfiles CCT domain profile. 141 183 IPR010402 GO:0005515
Glsi03g1012 372 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 259 - -
Glsi03g1012 372 Pfam CCT motif 141 182 IPR010402 GO:0005515
Glsi03g1012 372 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Glsi03g1012 372 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Glsi03g1012 372 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Glsi03g1012 372 PANTHER GATA TRANSCRIPTION FACTOR 28 5 351 IPR045280 GO:0006355
Glsi03g1012 372 SMART tify_2 68 103 IPR010399 -
Glsi03g1012 372 CDD ZnF_GATA 209 252 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1012 Glsi-ChrGlsi03 65133374 65141416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1012 74 253 Tify Gene Family AT1G51600 56.383 1.53e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi03g1012 CCT 1.6e-13 CL0281