Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0974 ATGGGAAGAGGGAAGATAGTGATTAGAAGGATAGACAATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCAAAGGAGCTTTCAATTCTTTGTGATGCAGAGGTTGGATTGATTGTGTTCTCCAGCACCGGCAAGCTCTATGACTATGCAAGCACCAGCGTGAAATCTGTTATTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCATGTTATGAATCCAGCTTCAGAAGTCAAGTTAGATGGTGACATTGAAGGATGGTCAACAAATGAGCTTCTAGAGAAGGGTGTAGGAAGAGGGGTTTCTTGGGGAAGATTACTTTCCTAA 351 0.4188 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYDYASTSVKSVIERYNKLKEEHHHVMNPASEVKLDGDIEGWSTNELLEKGVGRGVSWGRLLS 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0974 116 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi03g0974 116 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Glsi03g0974 116 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi03g0974 116 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 84 - -
Glsi03g0974 116 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi03g0974 116 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Glsi03g0974 116 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi03g0974 116 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Glsi03g0974 116 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Glsi03g0974 116 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi03g0974 116 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi03g0974 116 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0974 Glsi-ChrGlsi03 64055896 64073821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0974 1 88 MADS-box Gene Family AT2G14210 80.899 1.32e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi03g0974 SRF-TF 4.5e-26 No_clan