Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0940 ATGGAGATTTCATCCATCGGAGAGTTACCTGAACTGGGAACAATGGAGGATTCTGCCTTTCTCCAGCAGTGGCACTTGAACACTTTTGATGATCCTAGCTTGTTGCCGATAGCTGCTGCTTTTGGGGAGACACTACAGCACCATTCATTCTCTACTTCAAACTTCAACCCCAGAAGCTGCATGGAAACTTCCCTTGCTGCCATTGAGAGACCCACAAAACAGCTCAAAACCAACAGTAATTGGAGCCCCAATGAAAGTGGCCAGACATCAGACCTACAATTTGCTTCTTGTTCAAACCTTCTTTCCTTTGTTAACCCAAATTACATAAACCAAATGGGCTTTGTGATGCCTAAGGAGGAGACAATTTCTTCAAACATCAATAGCACCGTTTCTTCGGATATTCTGATGTCTCAGGAATCCTTCGCGACCCAAAATTATTCCTTCAAGGCCTCCCAAGATTCCAAGAAGATTGGGGCAAGTCCTAAACTTTCTCAGCCTCAAGACCACATAATAGCTGAAAGGAAGCGAAGGGAGAAGCTCAGCCAGAGGTTCATTGCTCTATCTGCCCTTGTTCCAGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGATGCTATAAGGTATTTGAAGCAGCTGCAAGAGAAAGTGAGGATTCTTGAGGAAGAACGGACTAGGACGAGAACTGTGGAATCTGTGATAATTGTGAAGAAATATCAACTCTTTGCAGATGCCGAAGACTCTACCTCAGATTCTGGTGGTCCCATTGATGAGCCACTACCTGAAATTGAAGCTAGGTTTTGTGAAAGGAACGTCCTCATAAGAATTCACTGTGAGAAAAGCAAAGCAGTGATAGAAAAAGCAATAAGTGAAATTGAAAAACTCCATCTTACTGTCACCAATAGCAGTGCCATGACATTTGGGAGTTCTGCTCTTGATATCACCATTGTTGCTCAGATGGATATGGAATTCTGCATGACAGTGAAGGATCTTGTGACAAACCTACGCTCAGCTTTTAAATCTTTCATGCCTGTAATGTCTGCCATCTTTAGATCATCTACAACCAAGCATGGTAGCAGCTGTACCTGA 1089 0.4334 MEISSIGELPELGTMEDSAFLQQWHLNTFDDPSLLPIAAAFGETLQHHSFSTSNFNPRSCMETSLAAIERPTKQLKTNSNWSPNESGQTSDLQFASCSNLLSFVNPNYINQMGFVMPKEETISSNINSTVSSDILMSQESFATQNYSFKASQDSKKIGASPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIRYLKQLQEKVRILEEERTRTRTVESVIIVKKYQLFADAEDSTSDSGGPIDEPLPEIEARFCERNVLIRIHCEKSKAVIEKAISEIEKLHLTVTNSSAMTFGSSALDITIVAQMDMEFCMTVKDLVTNLRSAFKSFMPVMSAIFRSSTTKHGSSCT 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0940 362 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Glsi03g0940 362 Coils Coil 203 230 - -
Glsi03g0940 362 CDD bHLH_AtNAI1_like 167 238 - -
Glsi03g0940 362 Gene3D - 164 234 IPR036638 GO:0046983
Glsi03g0940 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Glsi03g0940 362 PANTHER BHLH TRANSCRIPTION FACTOR 41 340 - -
Glsi03g0940 362 SMART finulus 170 219 IPR011598 GO:0046983
Glsi03g0940 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 228 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0940 Glsi-ChrGlsi03 62681663 62685779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0940 15 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.650 3.28e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi03g0940 HLH 2.7e-10 No_clan