Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0935 ATGTTCGCCGGAGAAATTTCCCGTCGATGTTCACTACCCACCATTTTTGTTGTTCTGATTTTTCTCTGCTCTGTTTGTTCATCTCAATCAAATGAACTACAGACACTTATGAAGTTCAAGTCCTCTCTGCAAACTTCAAATGCAGATGTTTTCAGTTCCTGGAAGGCAGCTAATTCCCCCTGCAACTTCACTGGGATTGTCTGCAATTCCAAGGGATTTGTTACAGAAATCAATCTTGCCCAGAAACAACTAGTGGGTACTCTTCGTTTCGATTTAATTTGCGAGCTTCAATGGCTTGAGAAAATTTCTCTGGAGTCGAACTTCTTGAATGGCCGCATCAGTGAGGATTTGAGGAAATGTACTAATTTGCAGTACTTGGATTTGGGCGGGAATTCATTTACTGGGGCAGTGCCTGAATTATCTAATTTGAACAAGCTGAAGTACTTTAATATAAATGCTAGTGGAATTTCTGGAGCATTTCCTTGGAAATCATTGGAAAATCTTACTAGTCTCACCTTCTTAAGCGTTGGGGATAACATATTGGAAGGAAGTCCTTTTCCTGTGGAGGTCTTAAAGCTTGACAAATTGTATTGGCTTTACCTTACAAATTGCAGCATCACAGGGAAAATCCCATCGGGCATTGGGAATCTCACTCAGCTTGAGCACGTTGAGCTTTCTGATAACCAATTGACTGGTGAAATTCCAGCTGATATTGGAAAGCTTCAGAAACTCAGACAGCTTGAGATATATGACAACTTCTTGAGTGGGAAAATCCCAGTTGGATTCGGGAATCTTACGAATCTTGTCTACTTTGATGCTTCTAATAACCAGCTTGAAGGTGATCTTTCTGAGCTAAGGTTCTTGACAAACCTAGCTTCTCTGCAGCTTTTTCAGAACCAATTCTCTGGTGAAATTCCAATTGAGCTTGCAGATTTCAAAAACCTTACAGACATTTCTCTTTACTCCAACAAGCTCACTGGCCATCTCCCTCAAAAGCTTGGCTCCTGGGTAGGCTTACAATTCATTGATGTATCAGATAATTCTCTTTCGGGTCCCATACCCCCTGACATGTGTAGGAACAACCAAATGAGCTTGCTAGCAGTCCTAAACAACAGCTTCACTGGAAGTATACCAGAAACATATGCAAACTGTTCATCTATGGTCCGTTTTCGGGTTAATATGAATTCGCTTTCGGGTAGCGTTCCTTCGGGTATATGGGGCTTGCCAAAACTGGAAATAATTGATCTTTCAACGAACCATTTTGAAGGTCCAGTAACATCTGATATAGCGAAAGCAAAATCTCTTGCCCAGCTGTTTTTATATGACAATCAGTTCTCAGGTGAGTTACCAATGGCAATCTCAGAATCTTCTTTATTGGTATCAATTAAGCTAAGTTCAAATAATTTTTCTGGTCAAATCCCAGAAACAGTTGGCAAGCTGAAGAAATTGGGTAGCCTTGAATTGAATGAAAACAATTTTTCGGGCACCATACCAGAGTCTTTAAGTTCATGTATTTCTCTGACTGAAATAAACCTTGCTGGTAACTCACTTTATGGGGAAATCCCTGCAAGTCTTGGGTCTCTGCCTACTCTCAACTCATTGAACTTATCCTCAAATAGACTTTCTGGTGAAATTCCATTGAATTTGTCAACTCTAAGACTTAGCCTTCTCGACTTATCAAACAACCAGCTGTTTGGTCCCATACCAGAATCACTCTCTATTCCAGCATTCACAGATGGGTTTAAGGGAAATCCTGGCTTATGCAGCCAGACTTTGGAACATTTCAGGTCATGTTCATTGGATAACACCGGCTCCAGCCAACATAGAACCATTATACTCTATTTCGTTGCTGGTATAATGGTTCTGTTCGTTTTAGTTGCATGTTTGCTCTTCCTGAAACTGAAGCAGAAAAAGTTTGAGCAGCCAGTGAAGACTAACTCTTGGGATTTGAAGCAGTACCACCTGCTAAACTTCAATGAAAATGAAATCGTCAATGGGATCAAGGCTGATAATCTGATTGGCAAAGGAGGGTCCGGGAATGTCTACAAGGTTGTGCTTAAATGTGGCAAAGAATTGGCAGTCAAACACTTATGGACTTCAAATCCGGGTGACCGGGGAAGTTTCCGGAGCAGCTCAGCTATGCTTAAAAGAAATTTCCGTTCATCAGAGTATGACGCAGAGGTGGCCACACTGAGCTCTATAAGGCATGTAAATGTGGTAAAGCTCTATTGTAGCATCACCAGTGAAGATAGTAGTCTTCTTGTTTATGAGTTTTTACCAAATGGAAGCTTGTGGGAAAGGCTGCACACCTGCAAGAAAACTCAGATGGGGTGGGAGGTTAGGTATGAGATTGCATTGGGGGCAGCTAGAGGATTGGAATATCTGCATCATGGTTGTGATAGGCCAGTTATACACAGGGATGTGAAATCCAGTAATATTTTGCTTGATGAGGAATGGAAGCCAAGGATTGCAGACTTTGGGCTTGCCAAGATTGTACAGGGAGGAGCAGGCAATTGGACCCATGTAATTGCCGGAACCCTTGGATACATGGCTCCAGAGTATGCCTACACTTATAAAGTGACTGAGAAGAGCGATGTCTACAGCTTCGGGGTAGTTCTAATGGAGTTGGTGACAGGGAAGAAGCCTAACGAATCAGTTTTTGGAGAGAACAATGACATTGTCTCCTGGGTATGCAGCAAAGCGAGGAGCAAAGAAGATGTGGATGAATTGGTGGATTCTACAATCCCAAAACATTTCAAAGAAGATGCCATGAAGGTTTTGAGAATTGCAACACTCTGCACAGTGAAAATTCCAAGTTCAAGACCTTCCATGAGAATGGTGGTTCAAATGCTGGAGGAGGCAGAACCTTGTTCTCTGACCAACGTTGTTGTGAATAGATGGTGA 2904 0.4194 MFAGEISRRCSLPTIFVVLIFLCSVCSSQSNELQTLMKFKSSLQTSNADVFSSWKAANSPCNFTGIVCNSKGFVTEINLAQKQLVGTLRFDLICELQWLEKISLESNFLNGRISEDLRKCTNLQYLDLGGNSFTGAVPELSNLNKLKYFNINASGISGAFPWKSLENLTSLTFLSVGDNILEGSPFPVEVLKLDKLYWLYLTNCSITGKIPSGIGNLTQLEHVELSDNQLTGEIPADIGKLQKLRQLEIYDNFLSGKIPVGFGNLTNLVYFDASNNQLEGDLSELRFLTNLASLQLFQNQFSGEIPIELADFKNLTDISLYSNKLTGHLPQKLGSWVGLQFIDVSDNSLSGPIPPDMCRNNQMSLLAVLNNSFTGSIPETYANCSSMVRFRVNMNSLSGSVPSGIWGLPKLEIIDLSTNHFEGPVTSDIAKAKSLAQLFLYDNQFSGELPMAISESSLLVSIKLSSNNFSGQIPETVGKLKKLGSLELNENNFSGTIPESLSSCISLTEINLAGNSLYGEIPASLGSLPTLNSLNLSSNRLSGEIPLNLSTLRLSLLDLSNNQLFGPIPESLSIPAFTDGFKGNPGLCSQTLEHFRSCSLDNTGSSQHRTIILYFVAGIMVLFVLVACLLFLKLKQKKFEQPVKTNSWDLKQYHLLNFNENEIVNGIKADNLIGKGGSGNVYKVVLKCGKELAVKHLWTSNPGDRGSFRSSSAMLKRNFRSSEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWERLHTCKKTQMGWEVRYEIALGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKIVQGGAGNWTHVIAGTLGYMAPEYAYTYKVTEKSDVYSFGVVLMELVTGKKPNESVFGENNDIVSWVCSKARSKEDVDELVDSTIPKHFKEDAMKVLRIATLCTVKIPSSRPSMRMVVQMLEEAEPCSLTNVVVNRW 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0935 967 ProSiteProfiles Protein kinase domain profile. 667 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0935 967 FunFam Receptor-like protein kinase HAIKU2 650 758 - -
Glsi03g0935 967 FunFam Leucine-rich repeat receptor-like protein kinase TDR 285 600 - -
Glsi03g0935 967 SUPERFAMILY L domain-like 60 377 - -
Glsi03g0935 967 Gene3D Ribonuclease Inhibitor 338 599 IPR032675 -
Glsi03g0935 967 Gene3D Transferase(Phosphotransferase) domain 1 759 961 - -
Glsi03g0935 967 FunFam Probable inactive receptor kinase RLK902 29 186 - -
Glsi03g0935 967 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 759 965 - -
Glsi03g0935 967 Gene3D Phosphorylase Kinase; domain 1 651 758 - -
Glsi03g0935 967 ProSitePatterns Protein kinases ATP-binding region signature. 673 695 IPR017441 GO:0005524
Glsi03g0935 967 Pfam Protein kinase domain 670 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0935 967 SMART serkin_6 667 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0935 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Glsi03g0935 967 Gene3D Ribonuclease Inhibitor 29 331 IPR032675 -
Glsi03g0935 967 SUPERFAMILY Protein kinase-like (PK-like) 659 952 IPR011009 -
Glsi03g0935 967 CDD STKc_IRAK 673 953 - -
Glsi03g0935 967 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Glsi03g0935 967 FunFam Leucine-rich receptor-like protein kinase family protein 187 284 - -
Glsi03g0935 967 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 214 - -
Glsi03g0935 967 SUPERFAMILY L domain-like 283 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0935 Glsi-ChrGlsi03 62600190 62603684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0935 19 966 Receptor kinase-like Gene Family AT1G09970 57.636 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi03g0935 Pkinase 1.1e-43 CL0016