LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g0923	ATGCTTCACGAGGAGTACCCCAAGCTTGGCAGTGTATTCGCTTCTCTTAAAGTCACCCTTTCATTAGCAGAGCACGAAGGAAAGGGAAGAAATAGACAAAGGGAAGAGTTAGTTTTCCTCTATTCATTAGCAATGGGTTACACCACTAAGATCTTATCCTGTCAAGCAATACTACCTTGCTCCATGACCTTGGTGGCAATCACACCTATATATGCTCTCATTAGAAAGCTAGGCTTTATACCCAAGGAGATAGGCAATCTTGATAAACTTGAGATATTAGAGTTGGAAAAGAACAGTTTGAGTGGAACTATTCCTTCAAATATTTTCAACATTTCCACATTGACGTACTTGGATCTTGCAATTAATTCTCTCTCTGGTCTTCTTCCATCAAACATGGGATGGGGCCTTCCCAATCTACAAAAATTATTCCTATCCAAAAACGAACTTGTTGGAAAAATTCCAGAGTTGAATATAATGATTGATGTGGCATCTGCATTGGAGTATCTTCATCATGGTTCTTCAACATCAGTGGTTCACTGTGATGTAAAGCCAAGTAATGTTTTATTGGATGAAGATATGGTAGCTCATCTTAGTGATTTTGGTATTGCCAAACTATTAGGTGAAGGGCAATTGGAAACTTATACCAAGACGTTGGCTACATTTGGCTACATTGCACCAGAGTATGGATGGAAAGGAGTTGTTTCCATTAAAGGAGATGTATATAGCTATGGTGTTATGCTGATGGAAATATTTACAAGGAAGAAGCCAACAGATGATATGTTTATTCAAGGACTAACTTTGAAAGATTGGATTAGAAAGTCAATGTCAGATTCAACAATTCATATTATAGATTCCAATTTGTTTCAAAGACACAATCAAAATATTGGTGATATATTACCATATATATCATCAATTTTGGAATTAGCCTTGAATTGTTGCACTGATTTACCTGAAACACGAATTAATATGACAGATGTCGTGGTGTCATTAAACAAAATTAAGGCCATGTTTATGCAAAATGGTAGGGGCACCACAACTTTAAATAACCATTACATCAGCTTGTAG	1065	0.3653	MLHEEYPKLGSVFASLKVTLSLAEHEGKGRNRQREELVFLYSLAMGYTTKILSCQAILPCSMTLVAITPIYALIRKLGFIPKEIGNLDKLEILELEKNSLSGTIPSNIFNISTLTYLDLAINSLSGLLPSNMGWGLPNLQKLFLSKNELVGKIPELNIMIDVASALEYLHHGSSTSVVHCDVKPSNVLLDEDMVAHLSDFGIAKLLGEGQLETYTKTLATFGYIAPEYGWKGVVSIKGDVYSYGVMLMEIFTRKKPTDDMFIQGLTLKDWIRKSMSDSTIHIIDSNLFQRHNQNIGDILPYISSILELALNCCTDLPETRINMTDVVVSLNKIKAMFMQNGRGTTTLNNHYISL	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g0923	354	Gene3D	Ribonuclease Inhibitor	75	135	IPR032675	-
	Glsi03g0923	354	Gene3D	Transferase(Phosphotransferase) domain 1	138	348	-	-
	Glsi03g0923	354	ProSiteProfiles	Protein kinase domain profile.	37	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g0923	354	SUPERFAMILY	Protein kinase-like (PK-like)	156	330	IPR011009	-
	Glsi03g0923	354	Pfam	Leucine rich repeat	89	149	IPR001611	GO:0005515
	Glsi03g0923	354	SMART	serkin_6	37	337	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g0923	354	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	177	189	IPR008271	GO:0004672\|GO:0006468
	Glsi03g0923	354	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	71	155	-	-
	Glsi03g0923	354	Pfam	Protein kinase domain	157	327	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g0923	354	FunFam	Leucine-rich repeat receptor protein kinase EMS1	77	171	-	-
	Glsi03g0923	354	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	139	342	-	-
	Glsi03g0923	354	SUPERFAMILY	L domain-like	78	156	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g0923	Glsi-ChrGlsi03	62379901	62389341	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g0923	153	344	Receptor kinase-like Gene Family	AT3G47570	38.889	4.94e-42	154

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Glsi03g0923		Pkinase	2.6e-25	CL0016