Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0922 ATGGGGAAAGAAATGAGGAAGCTAAAGTTTCATGAGAAGAAGCTGTTGAAGAAGGTAAATTTCTTGGAATGGAAGAGAGAAGGAGGTCACAGAGAAAATTATGTTATGCAGCGCTACCATGTTACTGGACGTGATGATTACAAGAAATATTCTAGTTTGTGTCGAATGGTTCAGAAGTTAGTGAATGTGCTGAAGCAGATGGACCCCAAGGACCCTTTTCGGATTGAGATGACTGATATGCTCTTGGAAAAGCTGTACAACATTGGTGTGATTCCAACCAGGCAAAGCATCTCACAGTGTGAACGTTTAACAGTGTCATCCTTTTGTAGGCGTAGGCTCTCAACTGTTTTGGTGCGATTAAAGTTTGCTGAGCACTTGAAAGAAGCTGTCACATACATTGAGCAGGGTCATATACGAGTTGGTCCAGAGACAGTTACTGATCCAGCTTTCCTTGTAACCAGAAATATGGAAGACTTCGTTACATGGGTGGATTCATCAAAGATAAAGAGAAAGGTTCTACAGTACAATGACAAGTTGGATGACTACGATGCAATGAACTGA 561 0.4135 MGKEMRKLKFHEKKLLKKVNFLEWKREGGHRENYVMQRYHVTGRDDYKKYSSLCRMVQKLVNVLKQMDPKDPFRIEMTDMLLEKLYNIGVIPTRQSISQCERLTVSSFCRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDSSKIKRKVLQYNDKLDDYDAMN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0922 186 FunFam U3 small nucleolar ribonucleoprotein IMP3 111 183 - -
Glsi03g0922 186 Coils Coil 172 186 - -
Glsi03g0922 186 SMART s4_6 111 174 IPR002942 GO:0003723
Glsi03g0922 186 SMART Ribosomal_S4_2 7 110 IPR001912 GO:0019843
Glsi03g0922 186 CDD S4 111 179 - -
Glsi03g0922 186 ProSiteProfiles S4 RNA-binding domain profile. 111 177 - -
Glsi03g0922 186 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 182 IPR022801 GO:0003735|GO:0015935|GO:0019843
Glsi03g0922 186 Pfam Ribosomal protein S4/S9 N-terminal domain 7 110 IPR001912 GO:0019843
Glsi03g0922 186 SUPERFAMILY Alpha-L RNA-binding motif 30 178 - -
Glsi03g0922 186 Pfam S4 domain 111 157 IPR002942 GO:0003723
Glsi03g0922 186 Gene3D - 111 185 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0922 Glsi-ChrGlsi03 62326220 62333131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0922 64 152 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 34.444 2.61e-09 52.8