LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g0901	ATGTTCATCAGCTGCACCAATTCTCAACCAATTTACTCTGGGCATATTTGTTTAGGACCAGAAAATGACACTATGGGTCCGCAATACAAATCAAACCTCACTTTCTTACTCAGCTCTTTGTCCTCTAAAGCATTGCTTTACAGTTTCTACAATGATAGCAGCTTTAACCGTGTCTATGGCCTCTTCCTCTGCAGAGGCGATGTTTCAAATGAGACCTGCCAAATATGTGTCGACACAGCAACTAAGAGAATCACAAATGAATGCCCAGATGATAAAAGGGCCATCATATGGTTTGACGAGTGCATGTTAAGGTATGCCAATTTTAGCTTCTTTGGAATAGCTCAGACAGCCCCTTCCATGGACCAATGGACTGACCTAGGTGGTGGAACTTCGGAGTCTGAAATTGATGCATCAGCTCTAATGTACCAACTAATAAGGGAAGCTTCAGATTCTGAAATGATGTTCAAGGCAGATAGATTGTCAGTGAGAAATGGAACTCAATTTAGGTTTGGGTTAGAGCAGTGTACTAGAGACATAAGTAGAAGTGCTTGCAGTAACTGCCTTCTGGAATTGTTGGGTCATATAAAGACTTGTTGCCAAGGGAAGGGAGGGTGGCGGATTTTGGCTCCAAGTTGCAATATGAGGTATGAGCAGTACATTTTCTTTGATGAACCATTAGCTCCACCACTGCCTGCGCCCACTAAGCCTCCATCACTGCCTGCGCCAGCTAAGCCAGAGCTGCAAATTGATGATAAAGCAGGAAAAGCAGGAATAAACACTCCGATCATTGCAGTCATCACCGTAGCATCAATTGTAACAGCAGCAGTTCTTTTGGGTATCTCGTATATTTTGTGCCTTAGAAAGAGAAGACTGAGAGATCCAGTAAAATCTAGAGAACTAGACTGGGGTAGGCGAGAAAATATAATAAATGGAATAGCAAAGGGCCTTCTGTATCTACATGAGGACTCAAGGCTGAAGATCATTCATAGGGATTTGAAAGCAAGCAATGTTTTATTGGATGATGAGCTGAAACCAAAGATATCAGACTTTGGAATGGCTAGGATTTTTGGTGGCAATCAAACTGAAGCTAAAACTAATGTAGTTGCTGGTACTTAG	1116	0.422	MFISCTNSQPIYSGHICLGPENDTMGPQYKSNLTFLLSSLSSKALLYSFYNDSSFNRVYGLFLCRGDVSNETCQICVDTATKRITNECPDDKRAIIWFDECMLRYANFSFFGIAQTAPSMDQWTDLGGGTSESEIDASALMYQLIREASDSEMMFKADRLSVRNGTQFRFGLEQCTRDISRSACSNCLLELLGHIKTCCQGKGGWRILAPSCNMRYEQYIFFDEPLAPPLPAPTKPPSLPAPAKPELQIDDKAGKAGINTPIIAVITVASIVTAAVLLGISYILCLRKRRLRDPVKSRELDWGRRENIINGIAKGLLYLHEDSRLKIIHRDLKASNVLLDDELKPKISDFGMARIFGGNQTEAKTNVVAGT	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g0901	371	SUPERFAMILY	Protein kinase-like (PK-like)	290	371	IPR011009	-
	Glsi03g0901	371	ProSiteProfiles	Gnk2-homologous domain profile.	115	221	IPR002902	-
	Glsi03g0901	371	Gene3D	-	129	221	IPR038408	-
	Glsi03g0901	371	Gene3D	-	13	110	IPR038408	-
	Glsi03g0901	371	ProSiteProfiles	Protein kinase domain profile.	194	371	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g0901	371	Gene3D	Transferase(Phosphotransferase) domain 1	282	371	-	-
	Glsi03g0901	371	PANTHER	CYSTEINE-RICH REPEAT SECRETORY PROTEIN	9	232	-	-
	Glsi03g0901	371	FunFam	Os07g0541700 protein	287	371	-	-
	Glsi03g0901	371	Pfam	Salt stress response/antifungal	22	107	IPR002902	-
	Glsi03g0901	371	Pfam	Salt stress response/antifungal	139	219	IPR002902	-
	Glsi03g0901	371	Pfam	Protein kinase domain	300	366	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi03g0901	371	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	327	339	IPR008271	GO:0004672\|GO:0006468
	Glsi03g0901	371	ProSiteProfiles	Gnk2-homologous domain profile.	11	110	IPR002902	-
	Glsi03g0901	371	FunFam	Cysteine-rich receptor-like protein kinase 28	13	109	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g0901	Glsi-ChrGlsi03	61701722	61704562	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g0901	291	371	Receptor kinase-like Gene Family	AT4G05200	67.901	7.20e-29	116

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Glsi03g0901		Pkinase	4.6e-14	CL0016