Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0884 ATGAACAAGATTCTCTTGGCTTTGATAATAGGGATTTGCGTAGGTTTTGTTTTTGGAGTGGGTTTGGCATTTCCCTTTGTATTTTGCTTCTGGTGCCGCAATAAACGTACACAGGTAAGGAGCAGTTCTCAGGAAACAGTGACCCTTTCTGTTCCTGTCGGGGGGCTTGATTCCCACACATCAACGTCGGACTCCAATGCGGGTCTCGAGTCAGAGTCACCCAGAACATCTGAGTGGAGTAACATGCCGTTTTGGTTGGAAGAACTTAGGAAGAAGAATGTAGTTTCTGCATGCGGAATTCCAAAGTATTCTTACAAATATATACAAAAGGCAACTTCTAATTTCACAACCATCATAGGTCATGGAGCATTTGGTTCTGTTTACAAAGCACAGATGCCCACTGGTGAGACAGTTGCTGTTAAAGTTCTTGGCACTAATTCCAGACAAGGAGAGAAGGAGTTTTTAACTGAGGTCCTGTTACTTGGAAGATTACACCACAAAAACCTTGTAGATTTGGTGGGATATACTGCAGAAAGAGGACAACATATGCTTCTTTACATTTACATGAGCAATGGCAACCTTGCTTCTCACTTATATGGTAAAAATCAGGAGCCATTGAATTGGGATGCAAGACTTCGCATAGCACTAGATGTAGCGAGGGGACTGGAATATCTACATTATGGGGCTGCTCCACCTGTTGTGCACCGTGACATCAAATCTTCCAACATATTGTTAGACCAGTTTATGAGAGCGAGGGTCACTGACTTTGGGCTTTCCAGACCAGAGATGATTAAACCTCGTTTGTCTAATGTCAGAGGAACTTTTGGATATCTTGATCCTGAGTATATGTGTACAAAAACCTTTACTAAGAAAAGCGATGTTTATAGTTTTGGTGTGCTACTGTTTGAACTGATTACTGGGAGGAATCCACAGCAGGGTCTGATGGAATATGTGAAACTAGCAGCCATGGAAGCTGAGGGTAAGGTTGGATGGGAAGAAATTGTGGATTCACAACTTAATGGGAAATATGATGTGCATAAGCTTGATGATATGGCTGCTCTTGCTTTCAAATGTGTCAGTGAGGCATCTAGAAACCGACCTTCAATGAGGGACATTGTTCAAGCATTATCTCATCTTTGTAAGAAGAAGCATAGTATAAATCATGATAAAAAGTCTTGGGCTGGAGCAGATGAAGTTTCCATTGAAGTGGGACAGCTGGAAACCCAGGATTTGTCATTGATAGAGCGTACAAACGTGATGCGCAGATTGCATAGCCGATAA 1281 0.4215 MNKILLALIIGICVGFVFGVGLAFPFVFCFWCRNKRTQVRSSSQETVTLSVPVGGLDSHTSTSDSNAGLESESPRTSEWSNMPFWLEELRKKNVVSACGIPKYSYKYIQKATSNFTTIIGHGAFGSVYKAQMPTGETVAVKVLGTNSRQGEKEFLTEVLLLGRLHHKNLVDLVGYTAERGQHMLLYIYMSNGNLASHLYGKNQEPLNWDARLRIALDVARGLEYLHYGAAPPVVHRDIKSSNILLDQFMRARVTDFGLSRPEMIKPRLSNVRGTFGYLDPEYMCTKTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMEAEGKVGWEEIVDSQLNGKYDVHKLDDMAALAFKCVSEASRNRPSMRDIVQALSHLCKKKHSINHDKKSWAGADEVSIEVGQLETQDLSLIERTNVMRRLHSR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0884 426 SUPERFAMILY Protein kinase-like (PK-like) 94 376 IPR011009 -
Glsi03g0884 426 CDD STKc_IRAK 119 376 - -
Glsi03g0884 426 Pfam Protein tyrosine and serine/threonine kinase 115 376 IPR001245 GO:0004672|GO:0006468
Glsi03g0884 426 ProSitePatterns Protein kinases ATP-binding region signature. 119 141 IPR017441 GO:0005524
Glsi03g0884 426 MobiDBLite consensus disorder prediction 52 77 - -
Glsi03g0884 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Glsi03g0884 426 Gene3D Transferase(Phosphotransferase) domain 1 189 401 - -
Glsi03g0884 426 SMART serkin_6 113 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0884 426 PANTHER OS01G0750732 PROTEIN 23 394 - -
Glsi03g0884 426 FunFam calcium/calmodulin-regulated receptor-like kinase 1 189 397 - -
Glsi03g0884 426 Gene3D Phosphorylase Kinase; domain 1 83 188 - -
Glsi03g0884 426 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0884 Glsi-ChrGlsi03 61491246 61498201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0884 99 384 Receptor kinase-like Gene Family AT3G19300 41.237 4.09e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Glsi03g0884 PK_Tyr_Ser-Thr 1e-48 CL0016