Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0863 ATGGCGACTCACCTCCCGGACTACTTCAAGTGTCCGATTTCGCTAGAAATAATGTCCGACCCGGTTATCATCTCTTCGGGTCACACCTTCGACCGCGCTTCAATCCAACGGTGGCTCGACGCCGGTCACCGGGCATGCCCAATTACCAAATTGCCCCTCCCTGATCACCCTTCTCTCATCCCCAATCATGCTCTTAGAAGCTTGATTTCCAACTATGCCCTTATCTCACCTCTGAAGCAGCAACCTCCTCCGCAACCCGAAACCCTACTATCCAATCTCACCTCTCGGTTGCCGTCCCTGGAAAATAGAATCGAATCGCTGGACCAACTCACCCGGTTTTCCAAGCGTGACTCGGTGTTCCGTCGGCGGTTGACTGAGTCAGGGGTCGTTTCGGCGGTGCTGAATTGTGTTGACTCCGGCGACCCTGGTCTTCAGGAGAAAGCGCTCTCCTTGCTGCTCAATCTAAGTCTTGACGACGATAACAAGGTGGGTTTGGTGGCGGAGGGTGTGATAGGAAGACTTGTAGCAGTTCTTCTTGGTGGCTCCCCAGATTGCCGAGCGGTGGCCGCAACCATGTTGACGAGCTTGGCGGTTGTGGAAGTGAACAAAGCCACAATTGGCGCGTACCCATATGCAATAGGAGCTCTGGTTTCGGTTCTTCGGGATGGTAAAGGCAGAGAGAAGAAAGAAGCGGCCACAGCGCTTTACGCTATCTGTTCTTTTCCTGATAATCGGAGGAGAGCCGTGGAATGTGGAGCGGTCCCCATTTTGTTTAGAAGTGCTGATTCTGGGCTTGAAAGGGCTGTTGAAGTCCTTGGTATTCTGGCTAAGTGTAAGGAAGGTAGGGAGCGAATGGAAAGCTTTCGCGGTTGTGTACAGATTCTTGTACATGTATTGAGGAATGGAAGCTCGAGGGGAGTTCAATATGCCCTGTTGGCACTGAATTCCCTTTGTTGTAATAGTGAAAAACTGGTTTTAGAGGCGACAAAAGAAGGAGTTTTGGAGATTTGTATGGGATTACTGGAAGATGATAATGAAAAAATAAGGAGAAATTCATCCAGTTTGATTCAGGTTCTGCGTGGCAATCATCTGATGAGTTGA 1101 0.5014 MATHLPDYFKCPISLEIMSDPVIISSGHTFDRASIQRWLDAGHRACPITKLPLPDHPSLIPNHALRSLISNYALISPLKQQPPPQPETLLSNLTSRLPSLENRIESLDQLTRFSKRDSVFRRRLTESGVVSAVLNCVDSGDPGLQEKALSLLLNLSLDDDNKVGLVAEGVIGRLVAVLLGGSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIGALVSVLRDGKGREKKEAATALYAICSFPDNRRRAVECGAVPILFRSADSGLERAVEVLGILAKCKEGRERMESFRGCVQILVHVLRNGSSRGVQYALLALNSLCCNSEKLVLEATKEGVLEICMGLLEDDNEKIRRNSSSLIQVLRGNHLMS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0863 366 PANTHER U BOX DOMAIN-CONTAINING 6 357 - -
Glsi03g0863 366 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Glsi03g0863 366 Gene3D - 262 360 IPR011989 -
Glsi03g0863 366 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Glsi03g0863 366 SUPERFAMILY ARM repeat 87 359 IPR016024 -
Glsi03g0863 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Glsi03g0863 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 82 IPR013083 -
Glsi03g0863 366 Gene3D - 87 261 IPR011989 -
Glsi03g0863 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Glsi03g0863 366 FunFam RING-type E3 ubiquitin transferase 85 361 - -
Glsi03g0863 366 Coils Coil 90 110 - -
Glsi03g0863 366 CDD RING-Ubox_PUB 6 55 IPR045210 -
Glsi03g0863 366 SUPERFAMILY RING/U-box 4 74 - -
Glsi03g0863 366 SMART arm_5 278 319 IPR000225 GO:0005515
Glsi03g0863 366 SMART arm_5 158 198 IPR000225 GO:0005515
Glsi03g0863 366 SMART arm_5 320 361 IPR000225 GO:0005515
Glsi03g0863 366 SMART arm_5 117 157 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0863 Glsi-ChrGlsi03 60649424 60650524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0863 1 361 U-box Gene Family AT4G21350 62.703 4.87e-157 444