Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0854 ATGGGCATGATTAGTATAGTTTTTCTCTTCTCGTTCTTCTTCATCCTCTGCTTCCTTACTCTGTTTTCCCATGCCGCCAATTCGATCACACCAGACAAATTTATCAGAGATGGTGACACTTTGGTGTCAGACGGACTCAATTTTGAACTGGGTTTCTTCAATTATGGCAACAGTTCGTTAAGATGCGTTGGGATTTGGTACAAAACTCCTGGACCAGCAGTTATCTGGGTTGCAAACAGAGATAAACCCATCAAAGACAGAGGAGGGGTTATAGCCATTGGAAGTGATGGAAATTTGGTTATCTTCGATGGAGAAAAGAATCAAATCTGGTCTAGTAAAGCATCGAATCCCAAGAAAAACTCCCAAGCTATTCTCCGTGATGATGGAAACCTTGTTCTTTCAAGCAGAGATGATGGAAAACAGGTATGGCGAAGCTTTGACAACCCTACTGATACATTTCTACCTGGTATGACAGTGCCAGTGAATGAGACGATGGGGGAGCAACGTGTCTTTGTCTCATGGAAATCTGCTACAGACCCTTCCTCTGGAAACTACACAATGGGGGTTGATCCTAGTGCATCAACCCAGATAGTGATTTGGGAAGGAGGCAAACGGAGGTGGAGAAGTGGGTACTGGGATGGCATGATATTTACGGGTGTTTCGAATATGACAGGAAACTATCTCTATGGTTTTAGACTCTACACGGATGATAAAGGAGCAAGGTACCTGGTTTATAGCCCTTTAAACGTCTCTGACAAGGTAAGGTTTCAGATAGGATGGGATGGGTATGAAAGGCAGTTCAAATGGAACGAAGGTGAGAAAGCATGGACCACAACGCAGCAGGAGCCTTATAATGATTGTGAGCATTATAACAAGTGTGGGGATTTTGCAGAATGCAGTTTTTTAAGTTCACCAATCTGTGTTTGCTTACGAGGGTTTCAACCAAAGCAATTGGATCAGTGGAATAAAGGGAATTGGTCTGGTGGGTGTGAGAGGATGACCCTATTGAAGGCTGAGAGGAATACTACTTCTGGAACGGAGGTGAATGTTGGAGAAGATGATTTCTTGGAGCTTAAGTGCCGGAAGTTGCCAGATTTCGCACATTTGGTGAATTCTAATAACGCAGATGATTGTAAGAGCAAGTGTCTGCAGAATAGTACTTGTACTGCATATTCATATGTTACAGAGATTCGATGCCTGATTTGGTATGGAGAGTTAGTTGATATTCAACACTTTGAAAATGGAGGAAATACACTCTATATCCGCCTAGCTGATTCTGAAATAGGTGATGGGGGGAAAAAAATCAAGATTGTGATAATATCAGCTGTTGTGTTGGGGTTAATCTGCCTAGGAATCACTTCATGGCTGGTGTGGAGGTTCAAGGGAAAGAAAGCAGTTACCTCAACGTCATGTTGTAAGAATAGCGATGTACCAATCTTAGACAATGCAAGCAAGAGTAGACAAGTATCAGCAGAATTTTCAGGATCAGCTGAATTTAGTTTGGAAGGTAATGAACTAAGTGGACCAGAACTGCCATTATTCAATTTTGATTGTATTGCAATAGCCACAGACAATTTCTCTGAGGAAAATAAGCTTGGGCAAGGGGGTTTTGGACCTGTCTACAAGGGAAAGCTTCGAGGGGGAGAACAAATAGCTGTCAAGAGGCTTTCGAGAAGATCTGGCCAAGGTTTGGAGGAGTTCAAGAATGAGATGATGCTAATAGCCAAACTACAACACAGAAATCTTGTTAGATTAATGGGTTGTTCTATTCTAGGGGAAGAGAAATTGCTGGTGTATGAATATATGCCAAACAAGAGCTTGGATTGCTTTTTATTTGATCTAGTTAAGCAAACACAACTAGACTGGAAAAAACGCTTTGAAATCATTGAAGGCATTGCGAGAGGGCTACTTTATTTGCATCGAGATTCAAGACTTCGAATAATTCATCGAGATCTAAAAGCAAGCAACATTCTATTAGATGAAGACATGAAACCAAAAATTTCAGACTTTGGCTTGGCTAGAATATTTGGGGGAAACCAGAATGAAGCCAACACAACGAGAGTAGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGGAAGGTCTATTCTCAGTTAAATCTGATGTCTATAGTTTTGGTGTATTATTACTTGAGATTGTGAGTGGCCGTAAGAACACGAGCTTTCGTAATTCAGATGACTCAAGTCTCATAGGATATGCCTGGCATCTTTGGAATGAGCAGAGAGCAATGGAGCTTGTTGATCCGTCAATTCGAGATTCGAGTCCCAAAAATAAAGTTTTCAGGTGCATACAAATAGGGATGTTGTGTGTGCAGGATTCAGCAGCTCATAGACCAACCATGTCTTATGTAGTGCTGATGCTAGAAAGTGAAGCAACAACTCTTCCTTTGCCAAGGCAACCTTTGCTCACTTCCATGAGGAGGAGGTCTGAAGACAGAGATTTTCACATGGATGTCCTTGATTGTTCCTCAAATGATCTGACAGTTACAATGGTGGTAGGGAGATAG 2532 0.4159 MGMISIVFLFSFFFILCFLTLFSHAANSITPDKFIRDGDTLVSDGLNFELGFFNYGNSSLRCVGIWYKTPGPAVIWVANRDKPIKDRGGVIAIGSDGNLVIFDGEKNQIWSSKASNPKKNSQAILRDDGNLVLSSRDDGKQVWRSFDNPTDTFLPGMTVPVNETMGEQRVFVSWKSATDPSSGNYTMGVDPSASTQIVIWEGGKRRWRSGYWDGMIFTGVSNMTGNYLYGFRLYTDDKGARYLVYSPLNVSDKVRFQIGWDGYERQFKWNEGEKAWTTTQQEPYNDCEHYNKCGDFAECSFLSSPICVCLRGFQPKQLDQWNKGNWSGGCERMTLLKAERNTTSGTEVNVGEDDFLELKCRKLPDFAHLVNSNNADDCKSKCLQNSTCTAYSYVTEIRCLIWYGELVDIQHFENGGNTLYIRLADSEIGDGGKKIKIVIISAVVLGLICLGITSWLVWRFKGKKAVTSTSCCKNSDVPILDNASKSRQVSAEFSGSAEFSLEGNELSGPELPLFNFDCIAIATDNFSEENKLGQGGFGPVYKGKLRGGEQIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSILGEEKLLVYEYMPNKSLDCFLFDLVKQTQLDWKKRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEDMKPKISDFGLARIFGGNQNEANTTRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIVSGRKNTSFRNSDDSSLIGYAWHLWNEQRAMELVDPSIRDSSPKNKVFRCIQIGMLCVQDSAAHRPTMSYVVLMLESEATTLPLPRQPLLTSMRRRSEDRDFHMDVLDCSSNDLTVTMVVGR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0854 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 146 - -
Glsi03g0854 843 Pfam Protein tyrosine and serine/threonine kinase 529 794 IPR001245 GO:0004672|GO:0006468
Glsi03g0854 843 Gene3D Transferase(Phosphotransferase) domain 1 602 803 - -
Glsi03g0854 843 PIRSF SRK 1 843 IPR024171 GO:0004674
Glsi03g0854 843 ProSiteProfiles Protein kinase domain profile. 526 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0854 843 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Glsi03g0854 843 Gene3D Phosphorylase Kinase; domain 1 502 601 - -
Glsi03g0854 843 SMART serkin_6 526 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g0854 843 CDD B_lectin 32 149 IPR001480 -
Glsi03g0854 843 SUPERFAMILY Protein kinase-like (PK-like) 511 821 IPR011009 -
Glsi03g0854 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 180 IPR036426 -
Glsi03g0854 843 Pfam D-mannose binding lectin 74 175 IPR001480 -
Glsi03g0854 843 SMART ntp_6 350 423 IPR003609 -
Glsi03g0854 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Glsi03g0854 843 ProSiteProfiles PAN/Apple domain profile. 350 424 IPR003609 -
Glsi03g0854 843 CDD PAN_AP_plant 349 424 - -
Glsi03g0854 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 804 - -
Glsi03g0854 843 SMART blect_4 32 149 IPR001480 -
Glsi03g0854 843 Gene3D - 20 146 IPR036426 -
Glsi03g0854 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 491 601 - -
Glsi03g0854 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 787 - -
Glsi03g0854 843 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Glsi03g0854 843 Pfam PAN-like domain 351 409 IPR003609 -
Glsi03g0854 843 CDD STKc_IRAK 532 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0854 Glsi-ChrGlsi03 60210670 60214510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0854 500 809 Receptor kinase-like Gene Family AT4G23230 61.093 4.73e-130 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi03g0854 PK_Tyr_Ser-Thr 3.2e-49 CL0016