Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0841 ATGAAGAAGAAGCGGATGAAGCTAAAGATGGTGAAGAAAATAGCTAGCCCCCTCCCTTCTCCATCGGAGGTATCGCCGGTGCCAAAGGGAACCGGGAAGCTGATAGCAGTCGAGGTTTGTATGCAACTTACCTATGACAGTCATCTAAAGAGTCGTTCCAATGCAATTCTTGGAAATGGTATGGAATGGCTTACATCTGACCTCTCAAAATTCAGGCATTTGGCTTCATCCAGGCATGTGAAGCAGAAGGAGAAGGATATAGCTATATGTGAATGCAAATATAATGCCAGTGACCCTGATAGTGCTTGTGGGGATAGATGTCTCAATGTATTAACCAGCTCTGAATGCACCCCTGGATACTGCCCCTGTGGTATCTTTTGCAAAAATCAGAGATTTCAGAAGTGTGAATATGCAAAATCAAAGTTGGTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGAACATTAAGGCAGGGCAATTTATCATCGAATACTGTGGAGAAGTAATTTCATGGAAAGAAGCTAAGCGTAGGTCCCAGGCTTATGAAACTCAAGGTCTCAAGGATGCATTTATTATTTTTCTTAATGCCTCTGAATCTATTGATGCAACAAGAAAAGGAAGCCTTGGTAGATTTATAAATCATTCCTGCCAAATTGTCTGTTGCCTCTGTGGTGCAGCCAAATGTTCTGGATTCCTTGGAGCAAAATCTCATGGTTTTCAGGAGGATACTTATTTATGGGAAGATGATGATGAAAGAAGATTTAAAAATATCGTACAGAAGCAAGTTGATGCAAAGTCTGCAGCTGAATGTTTGGCATCAAAGGAAGCACAGGAGGAGATTTTGAGATATGAGGAAATGAAGAATGAGGCTACTTCTGCACTTGATGCTTTATACGATGAAATAAGACCTGCCATTGAAGAATCCGATCTAAAAGAGCTTCTGAAGTAA 957 0.4127 MKKKRMKLKMVKKIASPLPSPSEVSPVPKGTGKLIAVEVCMQLTYDSHLKSRSNAILGNGMEWLTSDLSKFRHLASSRHVKQKEKDIAICECKYNASDPDSACGDRCLNVLTSSECTPGYCPCGIFCKNQRFQKCEYAKSKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEAKRRSQAYETQGLKDAFIIFLNASESIDATRKGSLGRFINHSCQIVCCLCGAAKCSGFLGAKSHGFQEDTYLWEDDDERRFKNIVQKQVDAKSAAECLASKEAQEEILRYEEMKNEATSALDALYDEIRPAIEESDLKELLK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0841 318 Gene3D SET domain 61 223 IPR046341 -
Glsi03g0841 318 ProSiteProfiles Post-SET domain profile. 220 236 IPR003616 -
Glsi03g0841 318 SMART shorttest3 85 137 IPR006560 GO:0005634|GO:0042054
Glsi03g0841 318 SUPERFAMILY SET domain 77 220 IPR046341 -
Glsi03g0841 318 SMART set_7 138 254 IPR001214 GO:0005515
Glsi03g0841 318 ProSiteProfiles SET domain profile. 133 287 IPR001214 GO:0005515
Glsi03g0841 318 ProSiteProfiles AWS domain profile. 85 136 IPR006560 GO:0005634|GO:0042054
Glsi03g0841 318 Pfam AWS domain 98 135 IPR006560 GO:0005634|GO:0042054
Glsi03g0841 318 PANTHER SET DOMAIN PROTEINS 71 220 - -
Glsi03g0841 318 Coils Coil 276 303 - -
Glsi03g0841 318 Pfam SET domain 149 223 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0841 Glsi-ChrGlsi03 52270766 52277709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0841 120 219 C2H2 Transcription Factor Family AT2G23740 37.719 4.46e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi03g0841 SET 1.7e-07 No_clan