Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0839 ATGTCTCAACATTTAAAACATAGCAACTCTCAATGGATTCACATCCAAATTTCATCTGGTGTTTACAGAGAAAAGGTCATCATTCCTAAAGATAAACCCTGCATTTATCTGGAAGGAGGTGGTAGCAACTTCACAAGTATCGAATGGAATGACCACGAAAGAACACATTTTAGTGCAACTTTCGAAACAAGAGCAAATAACACAGTGGCGAAGGGAATCACTTTCAAGAATACATACAATGACCCCGTAAGATCAGGAAAAAATGCCATCATTCAAGCTGTCGCAGCTAGGATTCATGCCGATAAATGTGCTTTCTTTGATTGCGGTTTCCTTGGGGTGCAAGACACCTTATATGATTCTGATGGCCGCCATTACTACCATAGGTGCTACATTAAAGGTGGAATCGATTTTATATTTGGAAATGGCCAATCTATCTTTGAGGAAAGCACAATCAGCTTTTCGATGGGAAAATTTGGGCCCAAGGACCTAGTTGGGACTATTACAGCACAGAAAAGGGAATCAGCAAATGAAGCGAGTGGGTTTGTGTTCAAAAACTGCACCATAACTGGGCAAGGAAAGGTCCTACTTGGGAGAGCTTACAAAGCTTATGCCAGAGTCATCATAGCCAATTCATTTCTATCAGATGTGGTTAGCCCCAAGGGATGGGATGCCTGGAACAACGTTGGCCATGAAGAAAGCATCACCTTTGTGGAGGAGGGATGCGGTGGAGCAGGAGCAGACAAATCGAAGCGTGTGCCGTGGATGAAGCACTTAAATGGAGCTGAGCTTGAGCAGTTGCTGAATATCTCTTTTATTGATGAAGAAGGGTGGATTCAAAAATTACCAACCGAGGTCTCCATTTGA 864 0.4282 MSQHLKHSNSQWIHIQISSGVYREKVIIPKDKPCIYLEGGGSNFTSIEWNDHERTHFSATFETRANNTVAKGITFKNTYNDPVRSGKNAIIQAVAARIHADKCAFFDCGFLGVQDTLYDSDGRHYYHRCYIKGGIDFIFGNGQSIFEESTISFSMGKFGPKDLVGTITAQKRESANEASGFVFKNCTITGQGKVLLGRAYKAYARVIIANSFLSDVVSPKGWDAWNNVGHEESITFVEEGCGGAGADKSKRVPWMKHLNGAELEQLLNISFIDEEGWIQKLPTEVSI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0839 287 SUPERFAMILY Pectin lyase-like 8 284 IPR011050 -
Glsi03g0839 287 Gene3D - 3 287 IPR012334 -
Glsi03g0839 287 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 279 - -
Glsi03g0839 287 FunFam Pectinesterase 3 282 - -
Glsi03g0839 287 Pfam Pectinesterase 6 257 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0839 Glsi-ChrGlsi03 50839877 50842612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0839 9 231 Carbohydrate Esterase AT2G19150 52.466 1.17e-76 233