Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0833 ATGGAGGAGGAGGAAGCTTTGCCAGACCATCTCCGCTGCAGCCGCACCGACGGGCGACAATGGCGGTGCCGCCGAAGAGTCATGGATAACCTGAGGTTATGTGAGATTCACTATCTTCAAGGCCGCCATCGGCAATACAAGGAGAAGGTACCGGAGTCGCTGAAGCTTCAGAGGAAGCGAAAAAAGGGGAATAATAAGAACGACTCTGTTCTAGACAATGTTGAAATTAGGGCACGGAAAGTGGGCAAGATGGCGAAGCTGATGAAGAAAAGGCGGAAAGCGTCAGATGGTTCAGAAGCATTGGATACTTCTGTGAGGAAAAAGGCGTTGAAGCAAGGTGATATGCAGTTGGAGTTGATAAGGATGGTTCTGAAGAGAGAGGTTGAGAAGAGAAAGAAGAAGCAAGGAGAGAAGAGGAAGAAGAAGCAGGAGGAGGAGGAGGAGGTGTTCCATTACAGTGAGGGAGAGTTGACAAGAGAATTGCCCAATGGTGTAATGGCAATCTCTCCAGCGTCGACGCCCCAAGATTACAGCAATGTGGGTTTCCATTGTCATGTTAAAGTGGGGCTTGATTATAAAGCCATTACCCCACGTTACTTCAGGTCCAAGAATGTTGAAAGGCTCCCTGCTGGCAAGTTGCAGGTAGTACCTTATGGGCGAAACTTGAAGAAGGGTAAGAGGAAGAAGTGCCATTGGTGCCAGAAAAGCGATTCTTGGAATCTCATAAAGTGTTCAAGCTGTCAAAAAGAGTATTTTTGCATGGATTGCATTAAAGAACGGTATTTTGATACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCACCTGTAAAGACTGCTTGGCAAGTCAATGTAAAGACCGTGAAAGTAAGGAATACTTAGCTGGTAAAAGAAGAGTTGACAGAATATTGTGTTTTCATTATTTGATCTGTATGCTCCTTCCTCTATTAAAGCAAATAAATGAAGACCAGAATTTTGAGCTAGAAGCAGAAGCAAAAAGTAAAGGGAAAATAACCTCTGACATCCACATCAAGCAGGTTGAGTTTGGCTGCAATAAGCAAAGCTACTGCAATCACTGCAAAACACCCATTTTGGATCTCCATAGAAACTGCTCTAGCTGTTCCTATTGCCTTTGCTTAAGATGTTGTCAGGAATTAAGTCAAGGAATCTCTGGAGAAATTAGCTCATCTATGTCCAAGTTACCTGAAAAAATGAAAGCTAGCATTGCCAATGAAGACCACCTTTTGGATAAGTTTGTTTCTAGTAGCAATTCAACTGCTACTTCATCATTACCTGTCTGGACAACTTGTAATGGTTCTCACAGTGTATCTTGCCCACCCACAGAGCTTGGTGGTTGTGGTGATAGCTTCCTTGAGTTAAGATGTGTTTTTCCCTTAAGTTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATAGTTTGCTGCTATGACTTCCCTGAAACTCTGGATAAAAGTTCAAGCTGTGCACTTTGTCTTGACAAAGATCATGAAATTGATGGATACAAGCAGTTACATGAAGCAGCTCTAAGAGAAGATTCAAATGATAATTGCTTGTTTTATCCAACAGTTTTGGATGTCAGTCGTGATAATTTTGAACACTTTCAGAAGCACTGGGGAAAAGGCCATCCTGTAGTAGTGCGAGATGTGCTTCGAAGTACATCAAGTCACAGTTGGGATCCACTGGTCATGTTCAGTGCTTATCTTGAGAGAAGCATTACAAGATATGAGAATGATAAGGATTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTAGAAATAAACATTAGGCAGTTTTTTACCGGGTCTCTTAAATGTCAGCCACAGAAAAATACTTGGCATGAGATGCTGAAATTGAAGGGTTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTGGTTGATGCTCTACCACTTCAAGAATACATGAATCCCATGTCTGGTCTTCTGAATTTAGCTGCAAATTCGCCACAAGGGAGTGCAAAACATGACATAGGACCATTTGTTTATATTTCATATGGCTGTTCTGATGAACAAGCTGAATCTGTGACAAAACTCTGTTATGACTCATATGATATGGTTAATATCATGGCACATACCACAGAGGTCCCTCTCTCTACAGAACAACTTACTAAAATAAGAAAATTATTGAAAAAGCACAGAGCTGCATGTCAGAGGGAGTCTTCTAAAATTACTACGGAGCAGATAAAGGGACAGAGTGTGAAAGGAAACTCATTATTGCATACAGAAGACATGGAACAAAAAGGATTGCAGAGTATGGTTGGAGAAGAAATTGACTTCTTCAGGAGAGTCAATAGAACAGCTTGCATCCCTACTGAAGCAAGAAAAGCAGCTAGTCAGAGTATGGATAGCAATATTTCCCAGGATGGAGAATGTGATTTAGATTCTGATTCTGAACCCTCTGTACTTTTCCATGGGACTGTTCAAAGAATTCCTTTATCCGTAGATCATAGTCATAGAAGGCCCTTTGAAAGCTCAAATAATGATAGAAATAAAAATTTTGCGGAGCATTCTGGTGCCCAGTGGGATGTTTTTCGCAGACAGGATGTTCCAAAGCTCATAGAATACCTTAAAAGACATTGTAATGAATTTTCTCATACCCATGACCATCAAAATCAGATGATTCATCCAATTCTAGATCAGAGCTTCTTTCTTGACAATACTCACAAAATGAGGCTTAAGGAGGAGTTTAAAATTGAACCATGGACTTTTGAGCAACGCATCGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATCCTAAGTGTTCTGTTCATGTGGTGCTTGAATTTGTATCCCCCGAAAACGTTACCAACTGTATACAGTTGATTGATGAGGTCCAACTGCTTCCAAAAGGCCATAAAGCAAAAGTAGACAAGTTGGAGGTGAAGAAAATGGCCCTTTATAGCATAAGTACAGCAATAAAAGAAATACGAGAGCTTACTTGCACAACATGA 3039 0.412 MEEEEALPDHLRCSRTDGRQWRCRRRVMDNLRLCEIHYLQGRHRQYKEKVPESLKLQRKRKKGNNKNDSVLDNVEIRARKVGKMAKLMKKRRKASDGSEALDTSVRKKALKQGDMQLELIRMVLKREVEKRKKKQGEKRKKKQEEEEEVFHYSEGELTRELPNGVMAISPASTPQDYSNVGFHCHVKVGLDYKAITPRYFRSKNVERLPAGKLQVVPYGRNLKKGKRKKCHWCQKSDSWNLIKCSSCQKEYFCMDCIKERYFDTQNEVKMACPVCRGTCTCKDCLASQCKDRESKEYLAGKRRVDRILCFHYLICMLLPLLKQINEDQNFELEAEAKSKGKITSDIHIKQVEFGCNKQSYCNHCKTPILDLHRNCSSCSYCLCLRCCQELSQGISGEISSSMSKLPEKMKASIANEDHLLDKFVSSSNSTATSSLPVWTTCNGSHSVSCPPTELGGCGDSFLELRCVFPLSWIKEMEVKAEEIVCCYDFPETLDKSSSCALCLDKDHEIDGYKQLHEAALREDSNDNCLFYPTVLDVSRDNFEHFQKHWGKGHPVVVRDVLRSTSSHSWDPLVMFSAYLERSITRYENDKDLLEACLDWCEVEINIRQFFTGSLKCQPQKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVVDALPLQEYMNPMSGLLNLAANSPQGSAKHDIGPFVYISYGCSDEQAESVTKLCYDSYDMVNIMAHTTEVPLSTEQLTKIRKLLKKHRAACQRESSKITTEQIKGQSVKGNSLLHTEDMEQKGLQSMVGEEIDFFRRVNRTACIPTEARKAASQSMDSNISQDGECDLDSDSEPSVLFHGTVQRIPLSVDHSHRRPFESSNNDRNKNFAEHSGAQWDVFRRQDVPKLIEYLKRHCNEFSHTHDHQNQMIHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQRIGEAVIIPAGCPYQIRNPKCSVHVVLEFVSPENVTNCIQLIDEVQLLPKGHKAKVDKLEVKKMALYSISTAIKEIRELTCTT 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0833 1012 ProSiteProfiles WRC domain profile. 7 53 IPR014977 -
Glsi03g0833 1012 Pfam WRC 8 49 IPR014977 -
Glsi03g0833 1012 Coils Coil 124 147 - -
Glsi03g0833 1012 CDD cupin_RmlC-like 889 948 - -
Glsi03g0833 1012 Gene3D Cupin 533 984 - -
Glsi03g0833 1012 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1010 IPR045109 GO:0032454|GO:0033169
Glsi03g0833 1012 ProSiteProfiles JmjC domain profile. 661 975 IPR003347 -
Glsi03g0833 1012 SMART cupin_9 642 975 IPR003347 -
Glsi03g0833 1012 ProSiteProfiles Zinc finger RING-type profile. 230 276 IPR001841 -
Glsi03g0833 1012 MobiDBLite consensus disorder prediction 129 149 - -
Glsi03g0833 1012 Pfam JmjC domain, hydroxylase 861 954 IPR003347 -
Glsi03g0833 1012 SUPERFAMILY Clavaminate synthase-like 540 995 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0833 Glsi-ChrGlsi03 50109687 50115396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0833 8 47 GRF Transcription Factor Family AT2G22840 47.500 6.27e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi03g0833 JmjC 8.2e-10 CL0029