Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0830 ATGAAAATGGTTGTATCCAAAAGGGCAGCTAAGCTAGCAATCCGAACAAGAAGATCTTCCCGTGGACTCAACAGGGTTCACGAATCTGATCAACTATTTACATTAAGTAAAGTTGGAATAGATCCCAGACTTCATAGGGAGATCGATAGCCACCATAAAGATGGAATAGCATGGCTCCAAAGGTGTGGAAAGAGTTGTCGTCTTCGATGGACAAACTATCTCCGGCCAGATATAAAGCGAGGTCGGTTCTCTTTTGAAGAGGAGGAGACAATAATTCAGCTACATAGAATTCTAGGAAACAAGTGGTCCGCCATTGCTTCTAGCTTACCTGGAAGAACAGACAACGAAATCAAGAACTACTGGAACACCCATATCAGAAAAAGGCTCCTTCGCATGGGAATTGATCCTGTCACACACAGTCCACGAATTGACCTTCTGGATCTCTCTTCCATTCTAAGCTCTCCTCTTTATGGCTCATCCTCCCAAATGAACCATAACATTCAAAGGCTTCTAGGGATGCAGCCTCTGCAGGTGAATCCAGAGCTTCTGAAGTTGGCTTCCTCACTAGTCCCAACTCGAGAAAACCTCAGCTTCTGTGCTCAAAATGGTCAAGAGAACCAGCCGCAAATTCAGAATCAAATCCCTGATCATGATCACTTTTTCCAAGTTCAAGAATTGCCTGCAGTTTGCACCACATTGAGCACCCCTTATGTCGATCAAAATTCTTCAAACTTCACTGACTTTAGCTCTGAACAGCATTATTCACAGCCAAGTGATTGGCAAAGCAATATTGGAATGGCTTCAGGTTCTCTAGCAGAAGAGTACTATGTCCCTGATCAGTTACCCTGCTATAGTTATTATAGTTCTGATCATCATCATCATCCCCAAAGTCTCATGAACCCTTCATTGTCAGAAACCTCAACTTTCCAGTATTCCAATAACAGCAACCAGAACTTCAGCTTCGCTTCAGTTCTATCGACTCCTTCTTCTTCAAGTCCCACACCATTGAATTCGAATTCAACATGTATCAATGGAAGCATCAGCAGCACAGAGGATGAGAGAGATAGCTATGGCAGCTGCAGCAACATGTTGAAATTTGAAATCCCAAATATTTTAGATGTTAATGAGTTCATGCAGAGGAAAATCTTATGGAAGAGCGATGAGAAAAGCGAAGATTTGGCTTGTGAGATCCCGACAGTGAGTCCAAGATTCCGGAGTGGATGCGCCGAAGAGCATGGGTTTGACACCTGTAGGGACACGTGTAATGGGTAG 1272 0.4347 MKMVVSKRAAKLAIRTRRSSRGLNRVHESDQLFTLSKVGIDPRLHREIDSHHKDGIAWLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHRILGNKWSAIASSLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRIDLLDLSSILSSPLYGSSSQMNHNIQRLLGMQPLQVNPELLKLASSLVPTRENLSFCAQNGQENQPQIQNQIPDHDHFFQVQELPAVCTTLSTPYVDQNSSNFTDFSSEQHYSQPSDWQSNIGMASGSLAEEYYVPDQLPCYSYYSSDHHHHPQSLMNPSLSETSTFQYSNNSNQNFSFASVLSTPSSSSPTPLNSNSTCINGSISSTEDERDSYGSCSNMLKFEIPNILDVNEFMQRKILWKSDEKSEDLACEIPTVSPRFRSGCAEEHGFDTCRDTCNG 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0830 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Glsi03g0830 423 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 57 304 - -
Glsi03g0830 423 Pfam Myb-like DNA-binding domain 80 124 IPR001005 -
Glsi03g0830 423 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Glsi03g0830 423 FunFam Transcription factor MYB39 82 143 - -
Glsi03g0830 423 CDD SANT 82 125 IPR001005 -
Glsi03g0830 423 Gene3D - 38 79 - -
Glsi03g0830 423 Gene3D - 82 129 - -
Glsi03g0830 423 SMART sant 79 127 IPR001005 -
Glsi03g0830 423 SUPERFAMILY Homeodomain-like 60 132 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0830 Glsi-ChrGlsi03 49805334 49809247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0830 57 378 MYB Transcription Factor Family AT4G21440 47.399 1.72e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi03g0830 Myb_DNA-binding 3e-14 CL0123