Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0822 ATGGTGGGAACAAGGGTGGGAGAATCAAAGGCAGAGTTATCGAAGAGGATGGATGGGGGGACATGGATGATATGGCTAAAGAGGAGGCCATCAATGGTGATAGCAGGAGATGCCATGAAAATGAAGCCTTCCATAGGAAACCCACAGGGTATTACTGTAAACGCACACGGCAAAGTCCAACCCTGTTATCTGTTGCTGCTGCAACCGAAGAGTAAGTGTAGATCTGTGGTCAAAGCAGAGTCACTCTCTTCGTCTCCTCATGATAACATCGTTACCCAGATTCCATACTCTTCCCAACTACCGTTCTCTGGCCGGAATCTTCGTGCCGTCTTCACTGGTCTTCGACCTATTCAGCTGCAAAATGGGTTTGTTCCAGGACCAATGAGAACGAAAATGGGTGAAGAAGAGGACATCAGACAAGCTAAAACAGAGCAGAACTCGCCGGAAACGTCCACCTGGGGCTCCGGTCTCCGGCGAGCCCTTGAATTTATCTCTTCCTTGATTTCTCTCTCTCATTCCATTAGGGTCTTCGCTGCAAAATGGCAACTGATTCGGAACAAACTGGAAGAGCTCCATTCCGGGCTAATAGCCGCCGGGAACTGCGATTCCATTGATAACCCATCACTCTCCTGCTTAGTTGCTGCAATGTTGGTAACCGTGAACGAGTGCTATGATCTCGCTCGCAGCTGCGTCGATCTTTCTTACAGTGGGAAGCTCCTGATGCAGAGCGATTTGGATGTGATGTTCGGCAAGTTCGATCGCCATGTGAAAAAGCTATCAGAAATATACAAAACCGGTATTTTGACTCATAGGTATGCGCTCGTTGTTTCGAGGCCCAGTCTTGGAGCTTGCAAGGAAGATATGAGGTTTTACATGACGGACTTGCTAACAAGAATGAAGATTGGCGATTTGAGTATGAAAAGGCAGGCTTTGATTAATCTGCATGAAGTTGTAGTGGAAGATGAGAAGTATGTGAAACTGATTGTGGAAGTGGGTGAGTTTGTTCATGTTTTGGTGAACTTTCTCGATTCGCCGGAGATGGGAATCCAAGAAGAATCTGCCAAGGCGGTGTCTGTGATTGCAGGTTTCGATTCCTATAAAGGGGTTTTGATCGGAGCTGGGGTTATTGCGTCGCTGATTCGGGTTTTGGAATGTGGCAATGAGTCCGGGAAGATAGGCGCTTCAAGGTGTTTGATGCAATTGACTGAGAATTCTGACAATGCTTGGTCGGTTTCGGCTCATGGGGGAGTCACAGCCTTGTTAAAAATATGCGCAAATGCACATTCTAAAGGAGAATTGGTTGGTGCTGCTTGTGCGGTATTGAGAAACCTTGTAGGTGTTGAAGAAATAAAGAGATTTATGGTTGAAGAGAGTGCGATTTCCACGTTTATTAAGCTTGTGAGATCTCAAGACGAAGCCATTCAAGTAAATTCCATAGATTTTATTCAAAATATTGCATCTGGAGACGAAATGGTTAGGCAAATGGTGATTAAAGAAGGTGGCATACGTGCTTTGTTACGTGTTTTGGATCCTAGATGGTCGTATTCTTCTAAAACCAGGGAAATAGCAATGAGAGCTATGGAAAATTTATGTTTTTCTTCATCTAGTTCTGTTATTATTTTGATGAATTATGGATTTATGGACCAACTGTTATACTACGTTCGCAATGGAGAAGTTTCGATTCAAGAATTGGCTCTGAAAGTGGCATTTAGATTATGTGGAACATCAGAGGAGGCTAAGAAAGCGATGGGTGATGCTGGTTTTATGCCAGAGCTTGTTAAGTTTCTAAATGCAAAATCATTTGAAGTTCGTGAAATGGCATTAGAGGCTCTCTCTGGCATGGTTATGGTACCTAAAAATAGAAAGAGATTTGTGCAGAATGACCAAAATATAGCCCTTCTTCTGCAATTGCTTGACCCAGAAGAGGGAAATTCAGGTAACAAAAAATTCTTAATTTCTATCTTGATGTCACTAACAAGTTGCAACAGTGGGAGAAAAAAGATTGTCAATTCAAATTATGCCAAAAACATAGAGAAACTTGCAGAAGCTGAAATTTCTCCAGATGCCAAGAGACTTGTGAGGAAGCTATCCACTAATCGGTTCCGCAGCATGTTGAGTGGAATCTGGCACTCATGA 2136 0.4354 MVGTRVGESKAELSKRMDGGTWMIWLKRRPSMVIAGDAMKMKPSIGNPQGITVNAHGKVQPCYLLLLQPKSKCRSVVKAESLSSSPHDNIVTQIPYSSQLPFSGRNLRAVFTGLRPIQLQNGFVPGPMRTKMGEEEDIRQAKTEQNSPETSTWGSGLRRALEFISSLISLSHSIRVFAAKWQLIRNKLEELHSGLIAAGNCDSIDNPSLSCLVAAMLVTVNECYDLARSCVDLSYSGKLLMQSDLDVMFGKFDRHVKKLSEIYKTGILTHRYALVVSRPSLGACKEDMRFYMTDLLTRMKIGDLSMKRQALINLHEVVVEDEKYVKLIVEVGEFVHVLVNFLDSPEMGIQEESAKAVSVIAGFDSYKGVLIGAGVIASLIRVLECGNESGKIGASRCLMQLTENSDNAWSVSAHGGVTALLKICANAHSKGELVGAACAVLRNLVGVEEIKRFMVEESAISTFIKLVRSQDEAIQVNSIDFIQNIASGDEMVRQMVIKEGGIRALLRVLDPRWSYSSKTREIAMRAMENLCFSSSSSVIILMNYGFMDQLLYYVRNGEVSIQELALKVAFRLCGTSEEAKKAMGDAGFMPELVKFLNAKSFEVREMALEALSGMVMVPKNRKRFVQNDQNIALLLQLLDPEEGNSGNKKFLISILMSLTSCNSGRKKIVNSNYAKNIEKLAEAEISPDAKRLVRKLSTNRFRSMLSGIWHS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0822 711 SMART arm_5 576 616 IPR000225 GO:0005515
Glsi03g0822 711 SMART arm_5 447 487 IPR000225 GO:0005515
Glsi03g0822 711 SMART arm_5 489 532 IPR000225 GO:0005515
Glsi03g0822 711 SMART arm_5 404 446 IPR000225 GO:0005515
Glsi03g0822 711 SMART arm_5 363 403 IPR000225 GO:0005515
Glsi03g0822 711 SMART arm_5 321 362 IPR000225 GO:0005515
Glsi03g0822 711 Gene3D - 292 700 IPR011989 -
Glsi03g0822 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 459 IPR000225 GO:0005515
Glsi03g0822 711 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 140 710 - -
Glsi03g0822 711 Pfam Armadillo/beta-catenin-like repeat 577 612 IPR000225 GO:0005515
Glsi03g0822 711 SUPERFAMILY ARM repeat 293 694 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0822 Glsi-ChrGlsi03 49494260 49498762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0822 292 581 U-box Gene Family AT3G46510 21.695 3.59e-08 55.1