Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0813 ATGCGCCTAGAATTATGGTTAAGGTTCCATGGACCTACTTTGTGCGATTTCTCATATCAGGAATTCTTTGTCCTCGTTGTTATTCAAGCCTACTTTCCACCAATTTCTCAGCCTGAGGGATTGCCACTTAGAATTCTTGATGCAAAAGGCAAAGAATGGATATTTCAGTTTCGCTTCTGGCCCAACAACAACAGCAGAATGTATGTTTTAGAGGGCGTCACTCCCTGCATACAGTCCATGCAATTGCAAGCAGGTGACACAGTAACATTCAGTCGGTTGGAACCAGAAGGGAGGTTGGTTATGGGGTTTAGAAAGGCTTCAAGTGCTATCTCTGATCAGGACAATGAAACAACTAAGATTGGAAATGGATTTTCTGCTCATACTGAAGTTGAATTGGCAGATCCTTGTACATGGTCTAAGGTTGATAAGTCAGGATACATAGCAAAAGAAGTATTGGGGAGAAAATCTTCAATATCCAGAAAGAGAAAGACTAGCACCCTAGGTTTAAAGAGTAAACGTCTAAGATTTGAACACGAGGATCTAATAGAGGTGAAGATTACGTGGGAAGAAGCTCAAGGCCTACTCCATCCCCCTCCTAACCATGTTCCCAGCATTGTGGTGATCGAGGGTTTTGAATTTGAAGAGTATGAGGATGCTCCAGTGCTTGGGAAGCCAACAATTTTCATGACTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCTGAAGTGGCGGAAATTGCCAGCAAGTGCTCTTCTTCCCCCAAAATGGTCATGTTCTCATAATATATGGGACCAGGAAAGATCTTCCTGTTTAGCAGCTCAAGAGCCCACAGCAGAACAACTTGAGAATTTTCTACCTTCTTGTAAGTCAGCTTTTTCCAAGAAAATGAAAGCCGCTAAGCAGGATCCTGATAATGTTGAAGCTTTGGAGGGACTTGACACACTTGCAAACCTAGCTATCTTGGGAGAGGGTGAGGCACTACCAGCATCTTCTCAGGTCACCACAAAACATCCACGGCATAGACCTGGGTGCTCTTGCATTGTTTGCATTCAGCCTCCCAGTGGGAAGGGCCCAAAGCATAAGCAGACATGCACATGTAATGTCTGCTTAACAGTGAAACGTCGTTTCCGTACTCTAATGTTACGGCGTGAGAAGAAACAGTCAGATAGAGAAGCAGAGACTACACGTAAAAAGCAGCAGCAACAGCGGCCTCAGCCATTACCCTCATCTGAGATTTTGCTTGATGATGATTCCCTCCCTTGTAGTAATATGGGAGATAGTAGTCCAAACCAAGACAGGGAGGGCGATGACGGTTCTGATGATGATCCTAACAGGACAAAATCATCTGCTTCACCATTTAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAGGAAGAGTTATCACCTGGTTCAGATTCTGGTGGCATGATGAAGTTGCTTCATGATGCTACTGAGAGGTATCTCTGTCAGCAGAGTATGAACTCGGGTGCTGAAGACACATTAGCCAGTCAGTCACAGAAAGTTGGAGGTGGGGTGAAGGAAGAGAAACACAGCAATGGTGGTGCCCTTGGCAATGGTGATCATGTTGCTGATAAGGAACATGCCCATGATTTATCTATGAATGTATGA 1650 0.4448 MRLELWLRFHGPTLCDFSYQEFFVLVVIQAYFPPISQPEGLPLRILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAISDQDNETTKIGNGFSAHTEVELADPCTWSKVDKSGYIAKEVLGRKSSISRKRKTSTLGLKSKRLRFEHEDLIEVKITWEEAQGLLHPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFMTDNVGEKIQWAQCEDCLKWRKLPASALLPPKWSCSHNIWDQERSSCLAAQEPTAEQLENFLPSCKSAFSKKMKAAKQDPDNVEALEGLDTLANLAILGEGEALPASSQVTTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSDREAETTRKKQQQQRPQPLPSSEILLDDDSLPCSNMGDSSPNQDREGDDGSDDDPNRTKSSASPFKGQIDLNIQPEREEELSPGSDSGGMMKLLHDATERYLCQQSMNSGAEDTLASQSQKVGGGVKEEKHSNGGALGNGDHVADKEHAHDLSMNV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0813 549 Gene3D - 19 110 IPR015300 -
Glsi03g0813 549 SMART B3_2 23 107 IPR003340 GO:0003677
Glsi03g0813 549 MobiDBLite consensus disorder prediction 387 403 - -
Glsi03g0813 549 SUPERFAMILY DNA-binding pseudobarrel domain 28 106 IPR015300 -
Glsi03g0813 549 ProSiteProfiles Zinc finger CW-type profile. 233 283 IPR011124 GO:0008270
Glsi03g0813 549 MobiDBLite consensus disorder prediction 534 549 - -
Glsi03g0813 549 MobiDBLite consensus disorder prediction 435 449 - -
Glsi03g0813 549 Pfam B3 DNA binding domain 38 105 IPR003340 GO:0003677
Glsi03g0813 549 Pfam CW-type Zinc Finger 238 280 IPR011124 GO:0008270
Glsi03g0813 549 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 28 509 - -
Glsi03g0813 549 ProSiteProfiles B3 DNA-binding domain profile. 43 107 IPR003340 GO:0003677
Glsi03g0813 549 MobiDBLite consensus disorder prediction 386 484 - -
Glsi03g0813 549 CDD B3_DNA 28 105 IPR003340 GO:0003677
Glsi03g0813 549 Gene3D - 237 290 - -
Glsi03g0813 549 MobiDBLite consensus disorder prediction 501 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0813 Glsi-ChrGlsi03 48779973 48785262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0813 29 391 B3 DNA Binding Superfamily AT4G32010 54.098 1.47e-128 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi03g0813 B3 2.1e-08 CL0405