Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0795 ATGAAAAGCAATGCCAAAGGTGCTCACTCCTCACGCTCTCTGAAAATGCAGGGCTTTGTTTCCATGGGGGGTTTGATCGATCTTAACACTACAGAGGACGATGAAACGCCATCATCGGGTTCTTCTGCTTCGTCCTCTCACTCGGGTATAAGCAATTCGGCTTCGGCTTCAACTTTGGCTCCTTCTTCGGTGTGCTTGGAGCTATGGCACGCGTGTGCGGGCCCCATGATCTCGTTGCCGAAGAAAGGTAGCGTGGTTGTGTACTTCCCACAGGGCCACTTTGAACAGGTTCAGGATTTTCCGGTCACCACCTATAATATCCCACCTCATGTGTTCTGCCGCGTTGTAGATGTCAAGCTCCATGCGGAGGAAGGGAGCGATGAAGTGTATTGCCAGGTTTCGTTGGTTCCTGAAAGTGAGCAAGCGGAGCAAAAACTGCCTGAAGGGGAAGTTGATGCTGATAGTGAAGAGGAGGATACTGAAACTGTAGTGAAGTCCACAACACCCCACATGTTTTGCAAGACTCTGACAGCTTCTGACACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGTGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAACCAACAGAGACCTTCCCAAGAGCTTGTGGCAAAGGATCTACATGGCCTGGAATGGAGGTTCCGGCATATCTACAGGGGTCAGCCAAGGAGGCATTTGCTCACAACTGGATGGAGTGGATTTGTAAACAAGAAGAAGCTTGCGTCTGGAGATGCTGTGCTGTTTCTGAGGGGTGAGAATGGAGAACTAAGATTGGGAATTCGTAGGGCTGCTCAATTGAATAGTGATGGTACATTTCCAGTTCCCTCGGCCCAGCAGTCGAATCCCAAAACTCTCATGGATGTGGTTAATGCTCTAACTACAAGATGTGCCTTTAGTGTGTGCTATAATCCCAGGTTTAGCTCATCAGGATTCATAATACCCCTCCACAAATACTTGAAGAGCCTTGATCATTCACACACAGTTGGAATGAGGATCAAAATGCGTTTTGAAACTGAAGATACTATAGAGAGAAGGTGCACTGGATTAATTGTTGGAATGAGTGATGTGGATCCTGTTAAGTGGCCTGGATCAAAATGGAGATGCCTATTGGTAAGGTGGAATGACATAGAAGCCACTAGGCATAACAGGGTTTCCCCTTGGGAAATTGAGCCATCTGGTTCTGCTTCCACTTCCAATAACTTGATGGCAACTAGTTTGAAGAGGAACAGGATCGGGTTGCTTTCAGCAAAGCTTGAATTTCCAGTCCCCAATGGGATTGGAACATCAGACTTTGGGGAATCTTTAAGGTTCCGAAAGGTCTTGCAAGGTCAAGAAATTTTTGGTGTTAATACTCCTTATGATGGTATTAATGCTCAGGGTCACCAGTTATCTGAAACAAGGAGGTACTATCCTGGTTCAAACTTTTCCGGAATTGTTGCAACAGGAAATAATATCAGAGTCCCACAAGTAAGTTCTGATGTTTCCTGCCATGGCATAGGCTTTAGTGAATCTTTTCGATTTCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATAGAAGAGCCTTGTCTATTGACGAGGCTCGAAGAAATGGTTGTGTTGGAGTTTTGGATGATTATCAATTGCTTGGCTCCCAAAATGGATGTTCTGCCCAGATGCGGGATAGTTCTGCACATTTACATCCATCTGGGCAAGTTTCATCTCCGTCATCTGTGTTATTGTTCCAGCAGGCAGTCAATCCAGTTTCAAATTTTGATTACAGTAATAAAAGTAATCAGGAGATAGGGGGAAAAACCCACTACCAAGGTTCATATGCTTCTGAAGTGAGAGGTAGAAAGTTTGCATTTTCCCCATCTTATGAGCCTATTTTCTGCAGCCAAGTTCAGCAAGGAACAAATTCTTTTGGTATGTTAAATATGCATAATCATCTGGTTACTGCACATGCAGATGATCCTCTTTCACTACTAAGAGGCAGCCAAGAGTTGGTTTCCTCTTGCAAAAGTAACTGCAGACTCTTCGGCTTTTCATTAACTGAAGAAAATCCTATTGAACTTAAAGAAGCTGACTCCTCTAACATCCCTTGTCAATTGAATTCTGGACCTTCTTTTACAAGACATGTTGGAGATGAGTTTCATCCAGAGCATTCGCTCAAGGGCAAGGTGGGTGGAAGCAACTGTACCAAAGGTGTACTGCAGGTTTGA 2241 0.4498 MKSNAKGAHSSRSLKMQGFVSMGGLIDLNTTEDDETPSSGSSASSSHSGISNSASASTLAPSSVCLELWHACAGPMISLPKKGSVVVYFPQGHFEQVQDFPVTTYNIPPHVFCRVVDVKLHAEEGSDEVYCQVSLVPESEQAEQKLPEGEVDADSEEEDTETVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSGFVNKKKLASGDAVLFLRGENGELRLGIRRAAQLNSDGTFPVPSAQQSNPKTLMDVVNALTTRCAFSVCYNPRFSSSGFIIPLHKYLKSLDHSHTVGMRIKMRFETEDTIERRCTGLIVGMSDVDPVKWPGSKWRCLLVRWNDIEATRHNRVSPWEIEPSGSASTSNNLMATSLKRNRIGLLSAKLEFPVPNGIGTSDFGESLRFRKVLQGQEIFGVNTPYDGINAQGHQLSETRRYYPGSNFSGIVATGNNIRVPQVSSDVSCHGIGFSESFRFQKVLQGQEILPSQPYRRALSIDEARRNGCVGVLDDYQLLGSQNGCSAQMRDSSAHLHPSGQVSSPSSVLLFQQAVNPVSNFDYSNKSNQEIGGKTHYQGSYASEVRGRKFAFSPSYEPIFCSQVQQGTNSFGMLNMHNHLVTAHADDPLSLLRGSQELVSSCKSNCRLFGFSLTEENPIELKEADSSNIPCQLNSGPSFTRHVGDEFHPEHSLKGKVGGSNCTKGVLQV 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0795 746 FunFam Auxin response factor 335 406 - -
Glsi03g0795 746 Gene3D - 170 274 IPR015300 -
Glsi03g0795 746 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 63 701 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi03g0795 746 CDD B3_DNA 170 272 IPR003340 GO:0003677
Glsi03g0795 746 MobiDBLite consensus disorder prediction 31 53 - -
Glsi03g0795 746 SMART B3_2 172 274 IPR003340 GO:0003677
Glsi03g0795 746 MobiDBLite consensus disorder prediction 27 53 - -
Glsi03g0795 746 SUPERFAMILY DNA-binding pseudobarrel domain 164 282 IPR015300 -
Glsi03g0795 746 FunFam Auxin response factor 170 274 - -
Glsi03g0795 746 ProSiteProfiles B3 DNA-binding domain profile. 172 274 IPR003340 GO:0003677
Glsi03g0795 746 Pfam Auxin response factor 299 379 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi03g0795 746 Gene3D - 336 409 - -
Glsi03g0795 746 Pfam B3 DNA binding domain 172 273 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0795 Glsi-ChrGlsi03 42924341 42942157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0795 62 526 B3 DNA Binding Superfamily AT5G60450 49.167 6.92e-142 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi03g0795 B3 2.5e-22 CL0405