Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi03g0778 | ATGGAAGCGTATGGTGGATACATGGTGGATGAGAAAGCTGTTAGAGTCGAGAATGTTTTCCTTGAATTTCTTAAGAGCTTCAGGTTCGGTCAACAGAACGAACCCCATTACGAATTGGAGATTGAAGCAATGAAAGCCAATGAATCCAACACAATGTTCATTGATTTCTCGCATGTCATCCTCTACAACGATCTCCTTCAGAAAGCCATCTCCGATGAATACTTAAGATTTGAGCCCTATTTGAAAAACGCCTGCAAAAGGTTCGTTATGGAGTTGAAGCCAACCTTCATATCTGACGATAACCCAAACAAGGACATAAATATTGCCTTCTACAACATTCCAATCGTTAAGAGGTTGAGGGAATTAACTACAGCAGAAATTGGAAAACTAGTATCTGTAACAGGAGTGGTGACAAGGACAAGTGAGGTCCGACCTGAGCTTCTCCAGGGCACTTTCAAGTGCTTAGAATGTGGCGGTGTTATCAAGCATGTGGAACAACAATTCAAGTATACTGAGCCAACAATCTGTGTAAATGCAACCTGTTTAAATCGAACAAAGTGGGCATTGCTGCGGCAAGAGAGCAAATTTACTGACTGGCAGAGGGTAAGAATGCAGGAGACATCCAAAGAGATTCCTGCTGGCTCTCTTCCTAGGTCATTGGATGTCATTCTTCGTCATGAGATTGTAGAACAGGCCAGGGCTGGTGACACGGTGATTTTCACAGGCACTGTGGTTGTTATACCCGACATATTGGCATTGGCCTCCCCTGGAGAGAGAGCGGAATGCCGCCGGGAAGCTTCTCAACACAAAAGTTCTGCAGTTGGAAATGAAGGTGTGAGGGGCCTTAGGGCTTTGGGAGTCAGAGACCTCTCCTACCGACTAGCTTTTGTTGCCAACTCTGTACAGACAAGTTTGTTAACAGCTTTTCCTCAGATTTGTGATGGTAGAAGAGATGCAGACATCAGGAATAGGAAGAAGGATTCAGATGAAGATGATCAGCAATTTACAGCACAGGAGCTGGATGAAGTTCAAAAAATGAGGAACACTCGAGATTTCTTTAACAAACTTGTTGACAGCATTGGTCCAACTGTATTTGGTCACCAAGATATAAAGCGAGCAATTCTTCTTATGCTCATGGGTGGAGTCCACAAATTTACTCATGAGGGCATCAACCTCAGAGGAGACGTTAATGTTTGTATTGTTGGGGATCCCAGTTGTGCCAAATCTCAATTTCTGAAATATACTTCTGGCATAGTTCCAAGATCTGTGTATACATCTGGCAAATCATCCTCTGCTGCTGGCTTGACTGCAAGTGTTGCCAAGGAACCTGAGACTGGGGAGTTTTGTATTGAGGCTGGTGCTCTGATGCTTGCTGACAATGGCATTTGCTGCATTGATGAATTTGATAAGATGGACATCAGAGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAGACAATTAGTATCACTAAAGCAGGGATTCAAGCCACACTCAATGCCCGTACTTCTATTCTTGCTGCTGCCAACCCTACTGGGGGACGCTATGATAAGTCTAAACCACTTAAGTATAATGTGGCTCTTCCACCAGCTATTCTCTCGAGGTTTGATCTAGTATATGTTATGATTGATGACCCAGATGATCAGACAGATTACCACATAGCCCATCACATTGTAAGAGTTCATCAAAAGCGTGAAGATGCTCTCACTCCAGCATTCACTACTGCAGAACTGAAGCGTTATATAGCTTTTGCAAAAACTCTTAAACCAAAGCTAACTCCAGATGCCAGAAAACTATTGGTAGACTCTTATGTTGCTCTCCGAAGAGGTGATACAAACCCTGGTAGTAGGGTTGCATATCGCATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCTGAGGCCATTGCACGGTGTCATTTGGAAAATCAGTCCAGCGAGATTGATCTCTCTGAGTTTCAAGAAGAAAACCCAGATGACAGGGCAGATGGTGATGATAACCCTGATAGTACTAGAGACGCTGATGGTCAAGTGGGAAACATTACAGCTCAGCAAGCTGCTGGAACTAATGAAAGTCCAGCAGATAATTCTAACCCTCAACAGGGGAAGAAACTTGTTATAAGTGATGAATATTTTCAGAGAGTCACACGTGCCCTTGTTATGCGCCTTAGACAGCATGAAGAAACTGTTATGCAAGGAACTGGATTGGCTGGAATGAGGCAGCGAGATTTGATCCAATGGTATGTCAGCCAGCAAAATGAGAAAAATAATTACAGTTCCATGGAGGAAGCAGCGGCAGAAGTTTCGAAAATTAAAGCTATTATAGAGAGTTTAATTCGAAGGGAGGGCCATTTGATAGTGGTAGATGATGGTAGGCAAGTGGCAGAGGAGGCTGAAGGTGCAGAGCAGTCAACATCGATATCTAGAAATGATAGAATCTTAGCTGTGGCTCCTAATTATGTCATCGATTGA | 2475 | 0.436 | MEAYGGYMVDEKAVRVENVFLEFLKSFRFGQQNEPHYELEIEAMKANESNTMFIDFSHVILYNDLLQKAISDEYLRFEPYLKNACKRFVMELKPTFISDDNPNKDINIAFYNIPIVKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKHVEQQFKYTEPTICVNATCLNRTKWALLRQESKFTDWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDILALASPGERAECRREASQHKSSAVGNEGVRGLRALGVRDLSYRLAFVANSVQTSLLTAFPQICDGRRDADIRNRKKDSDEDDQQFTAQELDEVQKMRNTRDFFNKLVDSIGPTVFGHQDIKRAILLMLMGGVHKFTHEGINLRGDVNVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREDALTPAFTTAELKRYIAFAKTLKPKLTPDARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLENQSSEIDLSEFQEENPDDRADGDDNPDSTRDADGQVGNITAQQAAGTNESPADNSNPQQGKKLVISDEYFQRVTRALVMRLRQHEETVMQGTGLAGMRQRDLIQWYVSQQNEKNNYSSMEEAAAEVSKIKAIIESLIRREGHLIVVDDGRQVAEEAEGAEQSTSISRNDRILAVAPNYVID | 824 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi03g0778 | 824 | SMART | mcm | 115 | 654 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi03g0778 | 824 | MobiDBLite | consensus disorder prediction | 648 | 706 | - | - | |
| Glsi03g0778 | 824 | FunFam | DNA helicase | 337 | 656 | - | - | |
| Glsi03g0778 | 824 | Gene3D | - | 330 | 656 | IPR027417 | - | |
| Glsi03g0778 | 824 | CDD | MCM6 | 355 | 644 | - | - | |
| Glsi03g0778 | 824 | FunFam | DNA helicase | 146 | 197 | - | - | |
| Glsi03g0778 | 824 | Gene3D | - | 146 | 197 | - | - | |
| Glsi03g0778 | 824 | Pfam | MCM N-terminal domain | 18 | 112 | IPR027925 | - | |
| Glsi03g0778 | 824 | Pfam | MCM6 C-terminal winged-helix domain | 704 | 823 | IPR041024 | - | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 219 | 230 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 166 | 183 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 278 | 299 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Glsi03g0778 | 824 | FunFam | DNA helicase | 701 | 824 | - | - | |
| Glsi03g0778 | 824 | Pfam | MCM P-loop domain | 340 | 562 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi03g0778 | 824 | ProSitePatterns | MCM family signature. | 461 | 469 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Glsi03g0778 | 824 | Pfam | MCM AAA-lid domain | 577 | 653 | IPR041562 | - | |
| Glsi03g0778 | 824 | Pfam | MCM OB domain | 119 | 247 | IPR033762 | - | |
| Glsi03g0778 | 824 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 249 | IPR012340 | - | |
| Glsi03g0778 | 824 | MobiDBLite | consensus disorder prediction | 674 | 705 | - | - | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 532 | 540 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 505 | 517 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 481 | 494 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 393 | 408 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi03g0778 | 824 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 453 | 467 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi03g0778 | 824 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 769 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Glsi03g0778 | 824 | Gene3D | - | 702 | 824 | - | - | |
| Glsi03g0778 | 824 | Gene3D | - | 119 | 247 | IPR012340 | - | |
| Glsi03g0778 | 824 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 363 | 653 | IPR027417 | - | |
| Glsi03g0778 | 824 | Coils | Coil | 762 | 782 | - | - | |
| Glsi03g0778 | 824 | Gene3D | - | 8 | 115 | - | - | |
| Glsi03g0778 | 824 | ProSiteProfiles | MCM family domain profile. | 352 | 558 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi03g0778 | Glsi-ChrGlsi03 | 37337649 | 37350113 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi03g0778 | 1 | 824 | Core DNA Replication Machinery Family | AT5G44635 | 71.005 | 0.0 | 1252 |