Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0752 ATGGCACGTACCAAGCAAACCGCTCGCAAGTCCACCGGCGGCAAGGCTCCGAGGAAGCAACTTGCCACCAAGGCTGCTCGGAAGTCGGCGCCGGCCACCGGCGGTGTGAAGAAGCCCCATCGTTTCAGACCCGGGACGGTCGCCCTGCGTGAGATCCGAAAGTACCAGAAGAGCACCGAGCTTTTGATCAGGAAGCTTCCTTTCCAGCGACTGGTTCGTGAGATCGCTCAGGATTTCAAGACCGATCTCCGGTTCCAGAGCTCGGCTGTGGCCGCGCTTCAGGAAGCCGCCGAGGCTTATTTGGTTGGCCTCTTTGAGGACACCAACCTTTGTGCTATTCACGCTAAGAGGGTCACCATTATGCCCAAGGACATTCAGCTTGCAAGGCGTATTAGGGAGCCATGGCTGAAGGTTTCTGGTTTCGCAAAGGTGGACCTGATCACTGGAGAAGTGAAGAAGTATACTTACGGGCAAAGAAGATATGGAGGGGAGCCATTTTTCTTGCCATTAAGGAAGAATAAAGAGGAAGAAGATGAAGGGTACATTCTGGCTCTAGTGCTCGATGAGAGGACATGGAAGTCAGAGTTGCAGATAGTGAACGCCATGGAGTTAATGGTGGAAGCAACGGTGAAGCTGCCATCGAGAATGTTGAAGAGTTCTATCAGCAGTGTGATCCCGCTCTTAAATGCTCATTTGAGTGGGCATATTCTTGAGGTTAATGGAATGCAGTCAAGGTCATACATACATCTACAATCTATGTGTACATAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCTTGCTGAGGAGGTGCCTCCAGAGCTTCCAGAACCAGCATTGGGTATTAACTTTGCCAGAGATAGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTCCACAATGATGCATGGTTACTTGTTGTGGCTTTTTATTTTGGTGCTAGATTTGGATTTGACAAGGCTAATAGGCATGTCTTTCCCTTTTTCCTTTAA 1020 0.4922 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIREPWLKVSGFAKVDLITGEVKKYTYGQRRYGGEPFFLPLRKNKEEEDEGYILALVLDERTWKSELQIVNAMELMVEATVKLPSRMLKSSISSVIPLLNAHLSGHILEVNGMQSRSYIHLQSMCTXKENLCLYGFPSEQWEVNLLAEEVPPELPEPALGINFARDRMQEKDWLSLVAVHNDAWLLVVAFYFGARFGFDKANRHVFPFFL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0752 339 ProSitePatterns Histone H3 signature 2. 67 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 PRINTS Histone H3 signature 98 114 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 PRINTS Histone H3 signature 80 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 PRINTS Histone H3 signature 58 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 PRINTS Histone H3 signature 114 135 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 SMART h35 34 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 Pfam Retinal pigment epithelial membrane protein 136 216 IPR004294 GO:0016702
Glsi03g0752 339 MobiDBLite consensus disorder prediction 1 41 - -
Glsi03g0752 339 Pfam Core histone H2A/H2B/H3/H4 1 132 IPR007125 GO:0003677
Glsi03g0752 339 FunFam Histone H3.3 53 134 - -
Glsi03g0752 339 Gene3D Histone, subunit A 2 134 IPR009072 GO:0046982
Glsi03g0752 339 SUPERFAMILY Histone-fold 2 134 IPR009072 GO:0046982
Glsi03g0752 339 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 PANTHER HISTONE H3 1 132 IPR000164 GO:0000786|GO:0003677|GO:0030527
Glsi03g0752 339 FunFam Histone H3 2 50 - -
Glsi03g0752 339 Pfam Alfin 250 333 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0752 Glsi-ChrGlsi03 30387524 30391682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0752 257 332 Alfin-like Transcription Factor Family AT5G20510 82.895 7.30e-32 116