LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi03g0715	ATGGTTTTATCCTCCCAAGCAGAGTTACCACTCAATGAGAATGACTCACAAGACATGGTGATATGCCAAGTTCTCAACGAGGCCAACGCTCTCAGCAGCAAATTTGCACCTCTCAGCGGGCACCAAACCGGTGCGCAAGCTGCCCTGCAACCCACCAGGAACATCGGCAAGAAGCACTACAGAGGCGTGAGGCGGCGGCCGTGGGGGAAATACGCGGCAGAGATCCGAGATTCGGCCCGGCATGGAGCTCGGATATGGCTTGGCACCTTTGAAACTGCAGAAGAGGCTGCCATGGCTTATGACAGAGCTGCTTTGAAAATGAGGGGTCCTAAGGCTTTGCTTAATTTTCTACCTGAAATTGTAGCTGCCTCCTCTTCTGTGCATTTATCTATGCCTATTTTAAGCCCAGAGAGCTTAAATAACCAGGATTCTGATTCAAGTGCTAGCAGCTCATGCACAAGTATTCCAGATCTAAAAAGTACGGCTACTCAGATAGATATGAAACCCGAGAACCACACCTCAACACATCAATATATAGAGTAA	543	0.488	MVLSSQAELPLNENDSQDMVICQVLNEANALSSKFAPLSGHQTGAQAALQPTRNIGKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFETAEEAAMAYDRAALKMRGPKALLNFLPEIVAASSSVHLSMPILSPESLNNQDSDSSASSSCTSIPDLKSTATQIDMKPENHTSTHQYIE	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi03g0715	180	ProSiteProfiles	AP2/ERF domain profile.	59	117	IPR001471	GO:0003700\|GO:0006355
	Glsi03g0715	180	CDD	AP2	58	116	IPR001471	GO:0003700\|GO:0006355
	Glsi03g0715	180	Gene3D	AP2/ERF domain	58	118	IPR036955	GO:0003700\|GO:0006355
	Glsi03g0715	180	Pfam	AP2 domain	59	109	IPR001471	GO:0003700\|GO:0006355
	Glsi03g0715	180	FunFam	Ethylene-responsive transcription factor 2	58	119	-	-
	Glsi03g0715	180	MobiDBLite	consensus disorder prediction	161	180	-	-
	Glsi03g0715	180	SUPERFAMILY	DNA-binding domain	59	117	IPR016177	GO:0003677
	Glsi03g0715	180	SMART	rav1_2	59	123	IPR001471	GO:0003700\|GO:0006355
	Glsi03g0715	180	PRINTS	Ethylene responsive element binding protein signature	60	71	IPR001471	GO:0003700\|GO:0006355
	Glsi03g0715	180	PRINTS	Ethylene responsive element binding protein signature	83	99	IPR001471	GO:0003700\|GO:0006355
	Glsi03g0715	180	PANTHER	DNA-BINDING DOMAIN	46	149	IPR044808	GO:0003700\|GO:0009873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi03g0715	Glsi-ChrGlsi03	20895693	20896235	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi03g0715	5	116	AP2-EREBP Transcription Factor Family	AT5G47220	48.462	1.26e-36	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi03g0715		AP2	3.7e-16	CL0081