Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0700 ATGCAGACCAGAAGCCACAGGCCTACAAAATATACTGAAGCCCAAATGCATTTCCGTTTTACTATTCCCGAAGTACTTCAAAGATTTGGCCTATTTTTTTATTTGCTCATTTCCTTTGTTCTCATTAATGGCTACGGAAATGAGGCTACAAATGGAGATGACAAAGTTATACCTATTGGTGCAATTATTGATGTTAACTATCGTATTGGTAAAGAGCAGCAAATAGCCATGGAAATTGCAGCTCAAAATTACAATAACACGTCAAGGAACCACAAGCTGGCTCTCTATTTCCAGAACCCCCCTAAGGAGCCCTACAGTGTCATGTCTCTCGCTGAAGAGTTGATTGAAATGCAGAAAGTGCAAGTGATTATAGGGATCCATACATGGCCAGAAGCAGCTCTAGTGGCTGGAGTTGGAAGCCAAGCTCGAGTTCCAATCATATCCTTTGCAGCACCTGCAATTACCCCATTGCTGACGCCAAAGCGCTGGCCTTTTCTGATAAGACTAGCTAACAATGGCACTGCATATATAAAATGCATTGCAGATATAGTTAATGCTTATAGTTGGCAGAGAGTAATAGCCATTTACGAAGATGATGGCTACGGTGGAGGAGACTATGGGATGCTAACACTACTCTCTGAGGCCCTTCAAGAGTTCGGTTCAATGATTGAGTACCGTTTAGCTCTGCCACCTGTTTCTTTTCTGCCTGATCCAGAAGGGCTAGTTCGAGAAGAGCTGCTTAAGCTATTGCAAACTCAATCTCGGGTTTTCATTGTTCTGCACTCATCATTAGAAATGATGACTCATTTGTTCAGAGAAGCTTCAAAGATGGGACTTGTGGATAGAGATTCAGCTTGGATAATCCCAGAGAGCATAACCAATTTGCTGGACTCGGTAAACAAGTCTGCTATTTCCTACATGGAAGGATCTTTAGGAATCAAGACATATTACTCTGAATATAGCAATGAGTATCAAGATTTTCAAGTTCAGTTCCGAAAACAATTTCGGGTCAAGAATCCTGAAGAAGATAATTTCAACCCAGGATTTTATGCTTTGCAAGCTTATGATAGCATCAAAATTATCATTCAGGCGGTAGAAAGAATGGCCGGTGACAACAGTAGCAGCCCAAAAGCTTTACTAAGAAAACTATTGTCTAGCAGTTTCCTTGGTTTAAGTGGGCAAATTCATTTTAAAGCAGGACAGCTCTTGCAGAATCCTATCTTAAGGGTGGTAAACGTAGTCGGGAATGGTTACAAAGAAATAGACTTTTGGACTCAAGGACTTGGGTTCACCACAAGCCTTCCTGCAGGAAAAGGTGGAGAAAATGCTACTGGTAGCACACAAGGTTTGGCTGGTGTGGTACAATGGCCTGGGAATTTGCAGAGGAGGAATCCAAAGGGATGGAATATGCCTATCAAACGCAAGCCAATGAGAATTGCAGTTCCAGGAAGAACTTCATTTTCCAAGTTTGTCAAGGTTGATTATGGCGATAATCTAACTCAGAATAAATACAGTGGATTCTGCATCGATATTTTCAATCTGGTGCTTGGACATTTGGAGTATGATCTGCCGTATGAGTTTTATCCCCTCAACGTCACTTATCCTGACCTGGTTCAGCTTGTCCATAACAAGACTTATGATGCGGTGGTTGGCGACATGACCTTACTTGCAGAGAGATTGCAATATGTGGATTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTCCATCGAAGTCTAAAGAGTCAGCATGGATGTTTTTGAAACCCTTCACCTGGCAATTGTGGGTGGTTACTGGTGCCAGCTTGGTTTACACAATGTTAACAGTTTGGTACCTTGAAAGAGAACCCAATCCAGAGTTTCATGGCAATTGGAAGAGCCAAATTAGCACTGCTCTTTGGTTTACCTTCTCCTCACTATTCTTTGCTCATAGGGAGAAAATGCATAGCAACTTATCTCGTGTGGTGATGATAGCATGGCTATTTCTAGTTATGATTCTGAGCTCAAGCTACACCGCTAGCCTTTCTTCAATGCTCACAGTTCAACAACTGCAGCCAAATGTCACAAGCATTGAGTGGCTGAAGATGAACAGCATGAAAATTGGTTGTGATGGTGACTCATTTGTTAGGACATACCTAGAGAAAGTTGAGAAGTTCAAGCCAGAAAACATCATAAACATTAGTAGTGAATACAGTTATGATGGCGAATTCAAAAACAAATCAATAGCAGCTGCTTTTCTCGAACTCCCATATGAAAAAGTATTCATCAGTAAATATTGCAAGGGATACTCTGGCTCTACACCAACTCTCAGATTTGGAGGACTAGGTTTTATATTCCAGAAAGGTTCTCCAGTGGCCAGAGATGTTTCCAAAGCTATATTGCAGCTGTCAGAAGAGGGAGAATTGAAGAATTTGGAAGCAAAATGGTTGCATCCCTCAAACGAGTGCTCCAACAACAGAACCTCCGATGACACAGACAGCTTGAAGCTTGGAAGTTTCTGGGTTCTCTATGTCATTTCCGGTGTCACTTCTACCATTTGTATACTACTTTCTATCATCCAATCGTTAAACCTCTGTCAACCACCTCAAAATGAGGCTCAAGAAGTCAATGGCCTCACAAGTGATGAGAGCATTTGGAAAAGAGCTGTTATAGTAGCTAAACAGATTTATAGCAGAAAACTTAATAAGACAAACGAGGCACAGGAAGATGTAACTGATTTTTCTTCCAGATGGGATTATGGAAGCAGATTCCGCAACAGTGATACCCCTTTGCATCAGCAAAGCAGTACTTCGCCAGTACCATCTATTATAACGGTCTCTTCCCCACCACCAGAGATACAAATGGAAACTCCCGATCATTGA 2868 0.4163 MQTRSHRPTKYTEAQMHFRFTIPEVLQRFGLFFYLLISFVLINGYGNEATNGDDKVIPIGAIIDVNYRIGKEQQIAMEIAAQNYNNTSRNHKLALYFQNPPKEPYSVMSLAEELIEMQKVQVIIGIHTWPEAALVAGVGSQARVPIISFAAPAITPLLTPKRWPFLIRLANNGTAYIKCIADIVNAYSWQRVIAIYEDDGYGGGDYGMLTLLSEALQEFGSMIEYRLALPPVSFLPDPEGLVREELLKLLQTQSRVFIVLHSSLEMMTHLFREASKMGLVDRDSAWIIPESITNLLDSVNKSAISYMEGSLGIKTYYSEYSNEYQDFQVQFRKQFRVKNPEEDNFNPGFYALQAYDSIKIIIQAVERMAGDNSSSPKALLRKLLSSSFLGLSGQIHFKAGQLLQNPILRVVNVVGNGYKEIDFWTQGLGFTTSLPAGKGGENATGSTQGLAGVVQWPGNLQRRNPKGWNMPIKRKPMRIAVPGRTSFSKFVKVDYGDNLTQNKYSGFCIDIFNLVLGHLEYDLPYEFYPLNVTYPDLVQLVHNKTYDAVVGDMTLLAERLQYVDFTVPYAESGLSMIVPSKSKESAWMFLKPFTWQLWVVTGASLVYTMLTVWYLEREPNPEFHGNWKSQISTALWFTFSSLFFAHREKMHSNLSRVVMIAWLFLVMILSSSYTASLSSMLTVQQLQPNVTSIEWLKMNSMKIGCDGDSFVRTYLEKVEKFKPENIINISSEYSYDGEFKNKSIAAAFLELPYEKVFISKYCKGYSGSTPTLRFGGLGFIFQKGSPVARDVSKAILQLSEEGELKNLEAKWLHPSNECSNNRTSDDTDSLKLGSFWVLYVISGVTSTICILLSIIQSLNLCQPPQNEAQEVNGLTSDESIWKRAVIVAKQIYSRKLNKTNEAQEDVTDFSSRWDYGSRFRNSDTPLHQQSSTSPVPSIITVSSPPPEIQMETPDH 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0700 955 FunFam Glutamate receptor 586 716 - -
Glsi03g0700 955 MobiDBLite consensus disorder prediction 920 955 - -
Glsi03g0700 955 Gene3D - 464 585 - -
Glsi03g0700 955 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Glsi03g0700 955 Pfam Receptor family ligand binding region 74 415 IPR001828 -
Glsi03g0700 955 Gene3D - 60 404 - -
Glsi03g0700 955 Gene3D - 759 819 - -
Glsi03g0700 955 CDD PBP1_GABAb_receptor_plant 59 434 IPR044440 -
Glsi03g0700 955 FunFam Glutamate receptor 472 586 - -
Glsi03g0700 955 CDD GluR_Plant 475 812 - -
Glsi03g0700 955 PIRSF IGluLR_plant 26 943 IPR017103 -
Glsi03g0700 955 FunFam Glutamate receptor 176 345 - -
Glsi03g0700 955 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 59 855 IPR015683 -
Glsi03g0700 955 Gene3D - 172 425 - -
Glsi03g0700 955 Gene3D - 586 725 - -
Glsi03g0700 955 SUPERFAMILY Periplasmic binding protein-like II 464 813 - -
Glsi03g0700 955 SUPERFAMILY Periplasmic binding protein-like I 54 467 IPR028082 -
Glsi03g0700 955 SMART GluR_14 478 814 IPR001320 GO:0015276|GO:0016020
Glsi03g0700 955 MobiDBLite consensus disorder prediction 920 947 - -
Glsi03g0700 955 Pfam Bacterial extracellular solute-binding proteins, family 3 501 812 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0700 Glsi-ChrGlsi03 19830509 19836233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0700 29 858 Ion Channels AT2G29120 32.363 4.06e-139 438