Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0698 ATGAATACAGTTCCAAACCTTTTGCTTCTTTTTCCTGTGTTCATCTCCCTTCTCCTATTCAAGTGCTTTATAGGAGCTGTAGCTGCCAACGGTTATGAAAGTACTGATGTTGGTGCAATTATTGATGTCAGTTCTCAAATAGGAAAACAACAGAGAAAAGCCATGGAAATTGCAACTCAAAACTTCAATCGCCATTCAAAGACTCACAAACTATCCCTCCATTTTCGAGATTCTGGTAGTAACCCATTACAAGCAGCTTCGGCTGCAAAGGAGCTTATAGATGAGAAGAAAGTAAAAGTCATTATTGGCATGGAGACATGGCAGGAAGCAGCTCTTGTAGCTGACCTTGGAGATAAAGCTAAAGTTCCCGTTATTTCATTCTCAGGTCCCTCAATAACCTCACCATCATCATCAATTCCACTTCGTTGGCCTTTCTTGATTCAAATGGCTAAGAATCAGACGGCAAATATGAACTGCATAGCAGATATTGTTCAAACATACAATTGGCAAAAGGTTATAGCAATATATGAAGACGACCCTTATAGTGGTGATTCTGGCATGTTAACCCTTCTTTCTGAAGCTCTCGTGAAGATTAATTCCCAGATTGAGCATAGACTAGTTCTTCCACCACTTTCTTCTTTGTCTGATCCAAAAGGCGTAGTTCTTGATGAATTGCTTAAGCTATTATCAGCACAATCTCGGGTTTTTATTGTTCTTAAAGCTTCATTGCCGATGGTAATCCATTTGTTCAGAGAAGCTACGAAAGTGGGGTTTTTAGGGAAAGAATCAGCTTGGATAATCAATGAGGGTATTACAAACATGCTGGACTCTGTTAATGATTCAGTTTTATCCTCCATGGAAGGTAGTTTGGGAATAAAATCCTACTATTCTACAAGTTCTAGTGCTTATACTCAGTTTCAGAAGAAGTTCAAAATTGAGCATGCAGAGAAAGTTGAGTCTAAACCAGGAGCAAATGCGCTACAAGCTTATGATAGCATCACAATCATCACAAAGGCCTTAGAAAAAATGAATTCTAATACTAGTAACTCAAGGGTGTTCCTAGAGAAAATGCTGGCCAGCAATTTCTCTGGTTTAAGTGGGAAAATTATATTAGAAGAAGGCCATTTATCCTACACTCCAATGTTAAGAGTCATAAACGTGGTTGGGAAGAAATACACAGAATTGAGCTATTGGATCCCAAATTTGAAGTTCTTTATATCTCCGAAGGATTCGGAGAAAATAGGTGGTTCTACTACAATAACTGGTCCTGTGGTTTGGCCTGGAGGCCTAAAGTCAGCTAATCCGAAAGGATGGGGAATACCTACTGAATATAATCTTTTAAAAGTAGCTGTTCCTATAAATCCAGCTTTTGATAATTTTGTTAGGGAAGAATCTCCAGATCAATATACTGGCTTGTGTATTGAAGTTTTTAAAAAGGTGCAATCATTTCTTAAAGACAGGTACTCTGGTCTGCCATACAAATTCTTTCCTTTCAATATATCCTACGATGAGCTTCTACAAAATGTTGTGAACCAGTCCTACGATGCTATTGTTGGAGATGTAACAATACTTGCTGAAAGATCAAAGGATGTGTCCTTCACTCAGCCATACACCGAGTCAGGTTTATCACTCATACTTCCAGCGGAGACAGAAGGGACAACATGGTTGTTTATGAAACCATTTAGCTGGGAAATGTGGTTGGCGACTTGCGGCATCCTCATCTACACAATGCTTATTATCTGGTTCTTGGAGCATCCATTAAACCCCGAATTTAAAGGACCATGGAAGCATCAATTCAGCACCACACTTTGGTTCGCTTTTTCTTCTCTATTTTTTGCTCACAGGGAGAAAGTCTACAGCAACTCTGCAAGAGTAGTAGTTGGTGGATGGTTATTCCTAGTGTTTGTTCTAACCTCAAGCTACACTGCCAGTCTATCTTCTATGCTCACTGTCAAAAGGATGAAGTCTGGGAGAGATATAGAGTGGCTAAAGAAAAATAATTTACCAGTTGGTTGTGATAATAGTAGTCAATTTGTCAAGAACTACATGCTGAAAGTGTATGATATCCCAGAGAAACAGATTGTAGAACTTCACGGTGAACATGACTATGTGGAGAAATTTAAGAGCAAACAAATTTATGCTCTGTTTCTTGAGAGCCCATATGAGAAGGTTTTCTTGAATAAGTACTGCAATGATTACACTGTAACCTCAGCTGACTATAAATTTGGAGGCCTAGGCTTTGTATTCCAGAAAGGTTCTCCTATGGTAAGAGACTTTTCTGAAGGTATTTTAACATTAGCAGAAAATGGAACGCTACAAACTTTGGAAGAGTACTGGTTAACCCCTTCAAATCAATGCTCAGATAACACAACGTCTGCTGAAACGGAGAGCCTGACCATTGGTGACTTTTGGGTTCTCTATGTTATCTCTGGTGCCACTTCCACCATCTGCCTTTCGCTGACTTTATTGAAAATTTACAACCGTAACCGTTACCATCATCAAGTGGCAGATCAAGGCAATGAAACTGCTGCTGATAATAGTGTTTGGAAGAAGGCATTTAGACTCTCTACAGGGCTTTACAATCGGAGTTACAATACTTTAGGAAGAGCTGCAACTTTTGGTGGAACACAAGGTTTACGCCATTGGAATTCCTCAAGGTGGGAGAGTATAAGGACTTCTGATGATCAAGGCAATCCACGACGCACCCAATCAGTTGACATAGAAATGATATAA 2733 0.3941 MNTVPNLLLLFPVFISLLLFKCFIGAVAANGYESTDVGAIIDVSSQIGKQQRKAMEIATQNFNRHSKTHKLSLHFRDSGSNPLQAASAAKELIDEKKVKVIIGMETWQEAALVADLGDKAKVPVISFSGPSITSPSSSIPLRWPFLIQMAKNQTANMNCIADIVQTYNWQKVIAIYEDDPYSGDSGMLTLLSEALVKINSQIEHRLVLPPLSSLSDPKGVVLDELLKLLSAQSRVFIVLKASLPMVIHLFREATKVGFLGKESAWIINEGITNMLDSVNDSVLSSMEGSLGIKSYYSTSSSAYTQFQKKFKIEHAEKVESKPGANALQAYDSITIITKALEKMNSNTSNSRVFLEKMLASNFSGLSGKIILEEGHLSYTPMLRVINVVGKKYTELSYWIPNLKFFISPKDSEKIGGSTTITGPVVWPGGLKSANPKGWGIPTEYNLLKVAVPINPAFDNFVREESPDQYTGLCIEVFKKVQSFLKDRYSGLPYKFFPFNISYDELLQNVVNQSYDAIVGDVTILAERSKDVSFTQPYTESGLSLILPAETEGTTWLFMKPFSWEMWLATCGILIYTMLIIWFLEHPLNPEFKGPWKHQFSTTLWFAFSSLFFAHREKVYSNSARVVVGGWLFLVFVLTSSYTASLSSMLTVKRMKSGRDIEWLKKNNLPVGCDNSSQFVKNYMLKVYDIPEKQIVELHGEHDYVEKFKSKQIYALFLESPYEKVFLNKYCNDYTVTSADYKFGGLGFVFQKGSPMVRDFSEGILTLAENGTLQTLEEYWLTPSNQCSDNTTSAETESLTIGDFWVLYVISGATSTICLSLTLLKIYNRNRYHHQVADQGNETAADNSVWKKAFRLSTGLYNRSYNTLGRAATFGGTQGLRHWNSSRWESIRTSDDQGNPRRTQSVDIEMI 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0698 910 PIRSF IGluLR_plant 5 906 IPR017103 -
Glsi03g0698 910 Pfam Receptor family ligand binding region 52 387 IPR001828 -
Glsi03g0698 910 Gene3D - 152 398 - -
Glsi03g0698 910 Gene3D - 728 788 - -
Glsi03g0698 910 FunFam Glutamate receptor 156 322 - -
Glsi03g0698 910 SUPERFAMILY Periplasmic binding protein-like II 426 781 - -
Glsi03g0698 910 Pfam Ligand-gated ion channel 782 811 IPR001320 GO:0015276|GO:0016020
Glsi03g0698 910 Gene3D - 38 379 - -
Glsi03g0698 910 FunFam Glutamate receptor 554 684 - -
Glsi03g0698 910 SUPERFAMILY Periplasmic binding protein-like I 37 438 IPR028082 -
Glsi03g0698 910 MobiDBLite consensus disorder prediction 890 910 - -
Glsi03g0698 910 Gene3D - 555 683 - -
Glsi03g0698 910 Gene3D - 442 554 - -
Glsi03g0698 910 SMART GluR_14 446 782 IPR001320 GO:0015276|GO:0016020
Glsi03g0698 910 Pfam Bacterial extracellular solute-binding proteins, family 3 459 781 IPR001638 -
Glsi03g0698 910 CDD PBP1_GABAb_receptor_plant 36 408 IPR044440 -
Glsi03g0698 910 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 840 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0698 Glsi-ChrGlsi03 19728421 19733297 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0698 17 818 Ion Channels AT2G29120 34.309 5.89e-137 431