Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g0671 ATGGATTTTTCCAAAAAGCGCAAAACGGAAGAGAATGGGAACACCGATTCTCCGCCACCCTCCACCGCCGTCACCGCTCTTTCTACAGAAGACATCCACAAGATCCTCCAACCCTTCCCCAAAGACCAGCTCCTTGATCTTCTCCAATCAGCCGCTTTGTGTCACTCTGATGTTCTTGAAGCTATTCGTTCCGTTGCTGACCGCGACTCTACTGCTCGGAAACTTTTTGTCCGTGGCCTAGCCGGGGAAACCACCACTGATACTCTTCGCAGTGTCTTCTCCTCCTTTGGGGATCTTGATGAGGCGATTGTCATCTTCGACAAATCGACCGGCAAGTCGAAAGGTTACGGCTTTGTAACCTTCAAGCACGTCGATGCTGCTGTATTGGCTTTGAAAGAGCCCAGCAAGAAAATTGATGGGAGAATGACTGTGACCCAGCTTGCGGCTGCAGGGATATCGGGGGGGCCTAGCGCTAATGCGGCGACATCTGGTAGTGATGTGTCGGCGAGAAAAGTTTTTGTTGGTAATGTCCCGTTTGATATCTCGTCGGAGAAGTTATTGAGTCATTTCTTAACGTATGGAGAAATCGAAGAAGGGCCTCTTGGATTTGACAAAGGGAGTGGAAAGTCCAAAGGTTTTGCGTTCTTTGTTTACAAAACAGAGGAGGGTGCAAGGGCGTCGCTGGTTGAGCCTGTCAAGACAATTGATGGTCATCAAGTAGTTTGTAAATTGGCCGTGGATCACAAGAAGGGAAAGCCTGGAGGGATTACGAATCAGACGCCGCCACAGCAACAGCAGTCTTCTTTGCCTGGTCCTGGTCCTATGATGGGGTCACAATATGGAGGTCATGGTTCTTTATCATCTTATGGGGGATATGGTGGTGGGCATCAGGCCTCTGCAGCATTGCCTGGAAATAACTATGGGATGCAGTCTACATTGCCATCATTTAATAATCAGGTTCCATCTTCTATAACTGCTAATAGCGGTGGGTACGGGTACGGGGTATATAGTGGTTCGCAGTTCAGTGGGCCGAACTCCGGTGATTATGGCGCAAGGTTGCCTCCAGCTTCCGCCGGAATGCCTTATGGAGGATTTCCAGAAGGCTCGCATTATGGGGGATGCCGCCTTACTACTGAGGTTTGTGATGGCTTATTGGGCGCAAATACTTTAAATGGTTGTGCTGATTTTGTGAATGCAGCAATGAAATCTTTGGTTTTGATTACATGGACTGCTGTAAATTTGTTGCTGCTTGGCCCTCCTTCTATGTGTTATGGTTCCGTTATAGCAAAAGCTTAA 1296 0.4846 MDFSKKRKTEENGNTDSPPPSTAVTALSTEDIHKILQPFPKDQLLDLLQSAALCHSDVLEAIRSVADRDSTARKLFVRGLAGETTTDTLRSVFSSFGDLDEAIVIFDKSTGKSKGYGFVTFKHVDAAVLALKEPSKKIDGRMTVTQLAAAGISGGPSANAATSGSDVSARKVFVGNVPFDISSEKLLSHFLTYGEIEEGPLGFDKGSGKSKGFAFFVYKTEEGARASLVEPVKTIDGHQVVCKLAVDHKKGKPGGITNQTPPQQQQSSLPGPGPMMGSQYGGHGSLSSYGGYGGGHQASAALPGNNYGMQSTLPSFNNQVPSSITANSGGYGYGVYSGSQFSGPNSGDYGARLPPASAGMPYGGFPEGSHYGGCRLTTEVCDGLLGANTLNGCADFVNAAMKSLVLITWTAVNLLLLGPPSMCYGSVIAKA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g0671 431 MobiDBLite consensus disorder prediction 251 280 - -
Glsi03g0671 431 SMART rrm1_1 74 146 IPR000504 GO:0003723
Glsi03g0671 431 SMART rrm1_1 171 243 IPR000504 GO:0003723
Glsi03g0671 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 238 IPR000504 GO:0003723
Glsi03g0671 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Glsi03g0671 431 SUPERFAMILY RNA-binding domain, RBD 66 152 IPR035979 GO:0003676
Glsi03g0671 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Glsi03g0671 431 Gene3D - 156 299 IPR012677 -
Glsi03g0671 431 PANTHER GEO13361P1-RELATED 56 301 - -
Glsi03g0671 431 FunFam UBP1-associated protein 2C isoform A 56 159 - -
Glsi03g0671 431 Gene3D - 64 151 IPR012677 -
Glsi03g0671 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 261 IPR000504 GO:0003723
Glsi03g0671 431 SUPERFAMILY RNA-binding domain, RBD 163 256 IPR035979 GO:0003676
Glsi03g0671 431 MobiDBLite consensus disorder prediction 1 23 - -
Glsi03g0671 431 MobiDBLite consensus disorder prediction 256 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g0671 Glsi-ChrGlsi03 18009717 18012484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g0671 157 370 C2H2 Transcription Factor Family AT2G19380 28.692 1.42e-15 77.0